Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01055 ATGGCTAGTTTCCTCTGCAAGACTCAGTTCATGCCGAAATTGTTGAGGTATACCTTCGCAACTTCACCGTCTCTAAAACCCTATAGTTTTCTGCTATTATCCCTGCAATATAGCTCTGTTGCTTCAGGTCGACATTCTTTCACTGTTTCGCACCTTACAAACGATTGTGGATTTTCTCCAGATTTAGCTCTGTTTGTTTCTGAGCGTATTACCTTTAGCACCGCAGAAAAACCAGACTCGGTTCTGGCGTTTTTCAGAAACCAAGATTTTTCAAATTCGCAGATTACTTACATTATCAGAAGGTATCCAACTTTGCTTTTAGCCAATCCTGAGAAAACCATTCTGCCCAAGCTTCAGTTTTTTCAATCTAAAGGAGCTTCTAACATGGAAATTAATAAAATTATTTTTGGCGAGCCAATAATTCTTAGAAGAAGTGTAGAAAAGCATTTGGACCCTGTTTTTGCTTTCTTGAAGAGTTTTCTTCAGACTGATGAGAGAACCATTATGTCCATTACACGATTTCCGCGTATAATAGGTGGGAATTTTCGAAAGAGAGTACTTCTCACCATTACAATTGTTCAGAATGCTGGTATGCCGATATCAAGCATTGTTTACTTTCTTCGTTTTAATCCTCGAATGTTTACCATGGATTCCAATCGGTTTATAAAGATTTTGGAGGAAGTACAGAATTTCGGCTTTCATCCATCAAAATCTAACTTCGTTCATGCTGCCCATTGCATGAGTGCGATGAGCAAATCCACATGGGAAAGAAAGGTCAAGATTTATAAGCGTTGGGGTTGGTCGGATGAAGATGTCCGTGCTGCATTTAGATGTCATCCATGGTGTATGACACTTTCTGAGGATAAAATCATGGCCTTCATGGGTTTCTTTGTCGATGAATTGGGTTGGGAGTCTTCACTTATTGCTAAAAGGCCTATTCTTATTTCATTGAGCTTGAACAAGAGGCTTATTCCAAGGGCTTCCGTTTTGCAAATGTTGTTTCAGAAAGGTTTGGTTAAAAATTTGACTTCAGCAACCCCATATTTATATTCCGAAAACTTGTTCTTAGACAAGTTTGTTCATCATCATCCAGAAGAAGCTCCTCACCTCCTCAAGATTTATAATGAAAAATTGAATCTCGGAACTCAACAGGTGTAA 1158 38.69 MASFLCKTQFMPKLLRYTFATSPSLKPYSFLLLSLQYSSVASGRHSFTVSHLTNDCGFSPDLALFVSERITFSTAEKPDSVLAFFRNQDFSNSQITYIIRRYPTLLLANPEKTILPKLQFFQSKGASNMEINKIIFGEPIILRRSVEKHLDPVFAFLKSFLQTDERTIMSITRFPRIIGGNFRKRVLLTITIVQNAGMPISSIVYFLRFNPRMFTMDSNRFIKILEEVQNFGFHPSKSNFVHAAHCMSAMSKSTWERKVKIYKRWGWSDEDVRAAFRCHPWCMTLSEDKIMAFMGFFVDELGWESSLIAKRPILISLSLNKRLIPRASVLQMLFQKGLVKNLTSATPYLYSENLFLDKFVHHHPEEAPHLLKIYNEKLNLGTQQV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49222676 49223833 - Bma022218.1 Bma05g01055 83139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01055 385 Gene3D Transcription termination factor 3, mitochondrial 138 373 IPR038538 -
Bma05g01055 385 Pfam mTERF 188 343 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 Pfam mTERF 82 274 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 SMART mt_12 204 234 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 SMART mt_12 168 199 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 SMART mt_12 238 268 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 PANTHER CGI-12 PROTEIN-RELATED 38 378 IPR003690 GO:0003690|GO:0006355
Bma05g01055 385 PANTHER OS04G0637500 PROTEIN 38 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01055 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - vvi:100240766 347.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g01055 Bma06g01511 CCT
Bma05g01055 Bma06g01511 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01055 Bma-Chr5:49222676 Bma06g01511 Bma-Chr6:51571777 2.33E-99 dispersed
Bma05g01046 Bma-Chr5:49098539 Bma05g01055 Bma-Chr5:49222676 0 proximal
Bma05g01055 Bma-Chr5:49222676 Bma05g01057 Bma-Chr5:49275592 0 proximal
Bma05g01055 Bma-Chr5:49222676 Bma06g01510 Bma-Chr6:51565768 5.17E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g337 . . . Bda08g00283 . Bpe14g01137 . Bma05g01055 Cmo08g01188 . Cma06g01484 Cma14g01633 . . . . . . . . . . . . Cla06g00494 Cam06g0531 Cec06g0531 Cco06g0535 Clacu06g0515 Cmu06g0517 Cre06g1288 Cone11ag0062 Cone18ag1417 . . Lsi05g01523 . . Cme06g00711 Blo02g00516 Blo07g00180 Bda11g00534 Bda13g00173 Bpe05g00845 Bpe13g00655 . Bma06g01511 Sed02g1207 . Cmo14g01671 Cma08g01215 . Car08g01086 . . . Bhi12g02086 Tan06g0862 Cmetu06g1898 . . . Lcy13g0191 Cla05g00633 Cam05g0694 Cec05g0705 Cco05g0701 Clacu05g0689 Cmu05g0656 Cre05g0727 Lsi09g01413 Csa03g01436 Chy06g00675 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000251 8 3 2 6 4 3 3 5 5 12 2 3 4 4 8 6 2 8 2 4 10 4 4 7 4 5 2 16 4 6 156
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57357 PF02536 mTERF 3.80E-25 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01055 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0