Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01060 ATGGCCAAAGTGAAGCCCTCGAAGCCATTGCCGTCCTCCGACGAAGCCTTATCGGACGGCGACAGTTCTTCTGGCGAGGAGGATCGGGTCAACGAGCAGATCAACGAGGAGGACGAGGAGGAGCTTGAAGCAGTAGCTCGCTCTGCTGCTTCCGATGACGAGGAGGCCACTGATAATAACTCCCCCGGCCAGGACGATGATTCTGGCGGCTCTGGTGGTGCTGACAACGGCGATGAAGAAGACGAAGAAAATGCTGAGTCTACTGCTGAGATTAGCAAGCGCGAAAAAAACAGACTTAAAGAAATGCAGAAACTCAAGAAACAAAAGATTCAGGAAATATTGGATGCACAGAATGCTTCTATTGACGCTGATATGAACAACAAGGGGGAAGGGCGCTTAAAGTATCTCCTACAACAAACAGAGTTATTTGCTCATTTTGCTAAAGGTGGTCAATCCTCTTCTCAAAAGAAATCAAAGGGGAGGGGTCGCCATGCTTCAAAAGTAACTGAAGAGGAAGAAGATGAAGAATGCCTTAGAGAGGAAGAGGATGGTTTGACTGGGACAGGGAACACTCGTCTGGTCACTCAACCCTCTTGTATTCAGGGGAAGATGAGAGACTACCAACTTGCTGGATTGAATTGGCTCATTCGACTGTATGAGAATGGAATAAATGGAATCCTTGCAGATGAAATGGGGCTTGGTAAAACATTGCAGACCATCTCTTTGATGGGTTATTTGCACGAGTTCAGGGGAATAACTGGACCTCACATGGTAGTTGCTCCAAAATCTACTTTGGGAAATTGGATGAATGAAATTCGTCGTTTTTGTCCTGTTATACGTGCTGTCAAATTTCTTGGAAATCCTGATGAGAGGAGAGATATTAGAGAGAATTTGTTGGTTGCGGGGAAGTTTGATGTTTGTGTGACTAGTTTCGAAATGGCTATTAAAGAGAAGACTTGCTTGCGACGCTTTAGCTGGCGTTATATCATAATCGATGAAGCCCATCGCATCAAAAATGAGAATTCCCTCCTTTCAAAGACGATGAGGCTGTATAATACTAATTATCGTCTTCTAATTACAGGAACACCACTTCAGAACAATCTTCATGAGCTTTGGGCTCTTCTTAACTTCCTTCTTCCAGAGATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAGATATCTGGTGAAAATGACCAGCAAGAGGTTGTTCAACAACTTCATAAGGTTCTTCGACCTTTTCTTCTTCGAAGATTGAAATCCGATGTCGAGAAAGGGCTACCTCCAAAGAAGGAGACTATTCTTAAAGTAGGCATGTCACAGATGCAGAAACAATACTATAGAGCTTTATTGCAGAAGGACCTTGAAGTTGTTAATGCTGGCGGAGAAAGGAAGAGGCTCTTAAATATAGCTATGCAGCTCCGTAAATGCTGTAATCATCCTTATTTATTTCAAGGTGCTGAACCTGGTCCGCCTTATACTACTGGAGATCATCTTATCATCAACGCTGGGAAAATGGTTCTTTTGGATAAGTTGCTTCCAAAGTTAAAAGAGCGTGATTCTCGGGTTTTAATATTTTCACAGATGACAAGATTGTTAGACATTCTTGAAGACTATTTAATCTTTAGAGGGTATTTTTACTGTCGGATTGATGGCAATACTGGTGGAGAAGATCGCGATGCTTCCATTGATGCTTTCAATAGGCCTGGGAGTGAGAAGTTTGTTTTTTTATTATCAACCAGAGCTGGAGGCCTTGGGATTAATCTTGCTACTGCAGATGTTGTTATTCTTTATGACAGTGATTGGAATCCCCAGGTTGATTTGCAAGCACAAGATCGAGCTCACAGGATTGGACAGAAGAAAGAAGTCCAAGTATTCCGCTTTTGCACAGAGTACACTATTGAGGAGAAAGTTATAGAGAGGGCTTACAAGAAACTTGCCCTTGACGCCCTAGTGATTCAACAAGGACGTTTAGCGGAGCAGAAGACTGTTAACAAGGATGAACTGCTTCAAATGGTGCGATTTGGTGCTGAAATGGTATTCAGTTCCAAAGATAGCACTATTACGGATGAGGACATTGATAGAATAATTGCAAAAGGAGAAGAGGCAACCGCTGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCAATCAAATTTAAAATGGACGACAATGCTGAACTGTATGATTTTGATGACGAGAAGGATGAGAGTAAGTTTGATTTCAAGAAAATTGTGAGCGAAAACTGGATCGAACCACCCAAACGGGAGCGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACATTGCGACAAGGTGGCCCAACCAAACCGAAGGAGCCTCGAATTCCTCGGATGCCGCAGTTGCATGATTTCCAGTTTTTTAACACTCAAAGATTAAGTGAGCTATATGAGAAGGAAGTGAGGTTTCTCATGCAAACTCATCAAAAGAATCAATTGAAAGACACAATCGATGTGGATGAGCCTGAAGACGGGGGCGATCCCTTGACTGCCGAAGAGCTGGATGAAAAGGAGCGCCTGCTAGAAGAAGGATTTTCTTCTTGGAGTAGAAGAGATTTCAATACATTCATCAGAGCCTGTGAAAAGTATGGTCGAAATGATATAAAAAGTATTGCTTCAGAGATGGAGGGGAAAACTGAAGAGGAAGTGGAAAGATATGCTAAGGTTTTCAAGGATAGATATAAAGAATTGAATGAATATGATAGAATTGTTAAGAACATTGAAAGAGGAGAAGCCAGAATTTCACGCAAAGATGAAATTATGAAAGCCATTGGGAAGAAGTTAGATCGTTACAAGAATCCCTGGCTGGAATTAAAGATCCAATATGGTCAGAACAAAGGGAAGTTATACAATGAAGAATGTGACCGCTTTATGATATGCATGGTTCATAAACTTGGATATGGGAACTGGGATGAGTTGAAGGCTGCATTTCGAACATCGCCCTTGTTTCGCTTTGATTGGTTTATCAAGTCTCGGACGACCCAAGAACTTGCTAGAAGATGTGATACCCTAATACGATTGGTGGAAAAGGAAAACCAAGAATACGACGAGAGAGAAAGACAGGCCCGCAAAGAGAAGAAGCTTGCAAAGCGCACAACGCCATCCAAGCGGCCGTCAGCTAGGCAGACTGAGAGCCCGTCAATAAAGAAAAGGAGGCAGTTATCGATGGATGATTATGTGGAGGGAAAGAGAAGGAAATGA 3234 42.33 MAKVKPSKPLPSSDEALSDGDSSSGEEDRVNEQINEEDEEELEAVARSAASDDEEATDNNSPGQDDDSGGSGGADNGDEEDEENAESTAEISKREKNRLKEMQKLKKQKIQEILDAQNASIDADMNNKGEGRLKYLLQQTELFAHFAKGGQSSSQKKSKGRGRHASKVTEEEEDEECLREEEDGLTGTGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVIRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKTCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLIINAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFRGYFYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDEKDESKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRFLMQTHQKNQLKDTIDVDEPEDGGDPLTAEELDEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKDRYKELNEYDRIVKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKRTTPSKRPSARQTESPSIKKRRQLSMDDYVEGKRRK 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49301361 49309281 + Bma022226.1 Bma05g01060 83144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01060 1077 SUPERFAMILY Homeodomain-like 858 908 IPR009057 -
Bma05g01060 1077 SMART ultradead3 200 392 IPR014001 -
Bma05g01060 1077 CDD SANT 858 902 IPR001005 -
Bma05g01060 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 419 IPR027417 -
Bma05g01060 1077 MobiDBLite consensus disorder prediction 87 103 - -
Bma05g01060 1077 MobiDBLite consensus disorder prediction 147 190 - -
Bma05g01060 1077 MobiDBLite consensus disorder prediction 1025 1077 - -
Bma05g01060 1077 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1073 - -
Bma05g01060 1077 MobiDBLite consensus disorder prediction 72 86 - -
Bma05g01060 1077 Pfam SNF2-related domain 217 484 IPR000330 GO:0005524|GO:0140658
Bma05g01060 1077 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 381 IPR014001 -
Bma05g01060 1077 Coils Coil 82 119 - -
Bma05g01060 1077 Gene3D - 943 1046 - -
Bma05g01060 1077 MobiDBLite consensus disorder prediction 1025 1039 - -
Bma05g01060 1077 MobiDBLite consensus disorder prediction 757 788 - -
Bma05g01060 1077 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 1073 - -
Bma05g01060 1077 Gene3D - 855 909 - -
Bma05g01060 1077 Gene3D - 205 420 IPR038718 -
Bma05g01060 1077 Gene3D - 425 717 IPR027417 -
Bma05g01060 1077 Coils Coil 1012 1043 - -
Bma05g01060 1077 SMART sant 957 1018 IPR001005 -
Bma05g01060 1077 SMART sant 855 904 IPR001005 -
Bma05g01060 1077 Pfam HAND 768 849 IPR015194 GO:0003677|GO:0006338|GO:0031491
Bma05g01060 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 702 IPR027417 -
Bma05g01060 1077 Pfam Helicase conserved C-terminal domain 507 619 IPR001650 -
Bma05g01060 1077 CDD SF2_C_SNF 505 630 - -
Bma05g01060 1077 SMART helicmild6 535 619 IPR001650 -
Bma05g01060 1077 ProSiteProfiles SANT domain profile. 854 906 IPR017884 -
Bma05g01060 1077 Gene3D ISWI, HAND domain 756 854 IPR036306 GO:0003677|GO:0006338|GO:0031491
Bma05g01060 1077 Pfam SLIDE 912 1022 IPR015195 GO:0003677|GO:0005634|GO:0006338
Bma05g01060 1077 Gene3D iswi atpase 910 942 - -
Bma05g01060 1077 CDD DEXHc_SMARCA1_SMARCA5 201 421 IPR044754 GO:0005524
Bma05g01060 1077 SUPERFAMILY Homeodomain-like 910 1032 IPR009057 -
Bma05g01060 1077 MobiDBLite consensus disorder prediction 1054 1077 - -
Bma05g01060 1077 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 767 857 IPR036306 GO:0003677|GO:0006338|GO:0031491
Bma05g01060 1077 MobiDBLite consensus disorder prediction 1 103 - -
Bma05g01060 1077 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 660 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01060 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - rcu:8262399 1874.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00875 Bma-Chr2:46932066 Bma05g01060 Bma-Chr5:49301361 4.75E-111 dispersed
Bma05g01060 Bma-Chr5:49301361 Bma11g00300 Bma-Chr11:2830538 9.20E-148 dispersed
Bma10g00219 Bma-Chr10:1995174 Bma05g01060 Bma-Chr5:49301361 8.06E-41 dispersed
Bma05g01060 Bma-Chr5:49301361 Bma07g00277 Bma-Chr7:3445040 6.69E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57359 PF00176 SNF2_N 8.40E-71 CL0023 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01060 Bma_Chr05 FPKM 21.371273 26.686007 29.131586 30.696562 12.892897 12.68729 19.841568 4.012127 5.896418 5.233884