Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01061 ATGTCTCTGAAGAGTATAATTCAGGATATGAGGTCTCGATCGCATCGGGTGGTCCAGGATGGCTTACCTCCCGCGGTGAAAGATGGTTTGGAGCAGAGCTGTTGGGCTTACATGCCTCGGGAGCTACTGCGGGAGGTTATTATGCGAATTGAGGCATCTGAGGGTGCTTGGCCGCCGAGGAAGAGCGTGGTTGCTTGTGCTGGAGTGTGCCGGAGTTGGAGAGTTATTACTAAGGAGATCGTCAAAACTCCTGAAACCTCCGGAAAGTTGACGTTTCCGATCTCTATAAAGCAGCCTGGTTCAAGGGAGTCTCTTCTCCAGTGCTTCATAAAACGAAACAGATCCACAAAAACTTATCACCTTTTTCTCAGTTTAACTAGTGCCCTCACTGATGATGGGAAGTTTCTTCTTGCTGCACGAAAATGTAGACGACCTACATGTACAGATTATATCATCTCTATTCGGGCTGATGATATGTCAAAAGGAAGCAGCACCTATGTTGGTAAATTAACGTATGTGCTTAAATGGATGGACTGTCCTCAATTTAATGTATCTGATAGGTCCAACTTTCTCGGAACTAAGTTCACAATATTTGATGGACAGCCGCCCCATGCAAGTGCCAAGATCACAAAAAGTCGCTCCACCAGGCTTGTAAATTTGAAACAAGTTTCACCCAGAATTCCTGTAGGAAACTTTCCAGTTGCTCGCATCTCATATGAATTGAACGTCCTGGGTTCAAGGCAAGTGCCTGGCGGAGTAGAGTACCCAGAGAGATTAGGGCAACCTCTATGCCAGTATTTTATGAAGACTGGAATGTGTAAATTTGGTGCTACTTGCAAGTATCACCATCCAAAACAGGGAGGGGGTCCTGCCATTCCTGCAACATTGAATTATTACGGATACCCACTACGACCGGGTGAAAAAGAGTGTTCTTATTACATCAAAACTGGCCAATGTAAATTTGGCGGGACATGTAAATTCCATCATCCACAGCCAGATAGTGTTCATCTTCCAACGCAATCCCAGGCTCCGAGCATTACCCATGTTCCCTCACCCAATGCGTATCCTTCTGTACAATCTCCATCTCTTCCTTCATCTCAACATTATGGGGTAGTAGTTGCAAGGCCATCTTTGCTGCCAAGTTCATACATTCATAGTGCTTATGGTCCTTTGCTTCTCCCCCAGGGGATGGTTCCTTTTCCAAGTTGGGGTCCTTATCTGACTCCACTAAACCCAGTAGCGTCTCCTAGCACTCAACCTTCTGTTGGTTCGGGATCACTTTATGGAATAACACAGCTTTCTCCTTCTGCCCCTGCATATATTGGATCATATCACACCATACCATCTGTTGGACCCTCAAGCAGTAGCCAAAGAGAAATGTTTCCAGAGAGACCAGGCCAACCAGAATGTCAGCATTACATGAGAACAGGGGATTGCAAATTTGGATCTTCATGTAAATATCATCACCCTCCAGAATTGATTGCTCCAAGAGCCAATGTTGTCCTTGGCCCAATGGGTCTTCCTCTTCGGGGCGCCCCTCAATGCACCCACTTTGCACAACATGGCGTATGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCATCAGGAACCCTTAGTTACAGCCCCTCTGCATCCTCTCTTGTCGATATGCCTGTCGCGCCTTACCCAGTGGGGTCCACGATCGGTACTTTAGCTCCATCTTCATCGTCCTCAGATTTACGGCCTGAAATTGTTTCAGGATCAAGTAAGGATTCTAATTCAGCTAGAGCTTCTTCATCATTGAGTGTATCCTCAGGGTCAACTGGTTCAATCATGTCAAGAAGTGGACCGTTTTCTCAGTCTAGTGTCAAACCGTCTTCCCAGAGTTCGGGCCCCTTCACTAGCTCTGTGTAG 1896 46.52 MSLKSIIQDMRSRSHRVVQDGLPPAVKDGLEQSCWAYMPRELLREVIMRIEASEGAWPPRKSVVACAGVCRSWRVITKEIVKTPETSGKLTFPISIKQPGSRESLLQCFIKRNRSTKTYHLFLSLTSALTDDGKFLLAARKCRRPTCTDYIISIRADDMSKGSSTYVGKLTYVLKWMDCPQFNVSDRSNFLGTKFTIFDGQPPHASAKITKSRSTRLVNLKQVSPRIPVGNFPVARISYELNVLGSRQVPGGVEYPERLGQPLCQYFMKTGMCKFGATCKYHHPKQGGGPAIPATLNYYGYPLRPGEKECSYYIKTGQCKFGGTCKFHHPQPDSVHLPTQSQAPSITHVPSPNAYPSVQSPSLPSSQHYGVVVARPSLLPSSYIHSAYGPLLLPQGMVPFPSWGPYLTPLNPVASPSTQPSVGSGSLYGITQLSPSAPAYIGSYHTIPSVGPSSSSQREMFPERPGQPECQHYMRTGDCKFGSSCKYHHPPELIAPRANVVLGPMGLPLRGAPQCTHFAQHGVCKFGPACKFDHSSGTLSYSPSASSLVDMPVAPYPVGSTIGTLAPSSSSSDLRPEIVSGSSKDSNSARASSSLSVSSGSTGSIMSRSGPFSQSSVKPSSQSSGPFTSSV 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49311291 49323135 - Bma022227.1 Bma05g01061 83145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 513 539 IPR036855 GO:0046872
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Bma05g01061 631 Gene3D Tubby Protein; Chain A 93 251 IPR025659 -
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 464 492 IPR000571 GO:0046872
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 306 333 IPR036855 GO:0046872
Bma05g01061 631 MobiDBLite consensus disorder prediction 565 631 - -
Bma05g01061 631 Gene3D - 463 546 - -
Bma05g01061 631 Gene3D - 257 343 - -
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Bma05g01061 631 PANTHER PROTEIN PHOSPHATASE RELATED 245 623 - -
Bma05g01061 631 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 245 623 - -
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 509 537 IPR000571 GO:0046872
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 259 285 IPR036855 GO:0046872
Bma05g01061 631 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Bma05g01061 631 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bma05g01061 631 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Bma05g01061 631 Pfam F-box domain 38 82 IPR001810 GO:0005515
Bma05g01061 631 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Bma05g01061 631 SMART c3hfinal6 464 491 IPR000571 GO:0046872
Bma05g01061 631 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Bma05g01061 631 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Bma05g01061 631 SMART c3hfinal6 509 536 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 466 491 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 513 535 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 285 IPR000571 GO:0046872
Bma05g01061 631 SUPERFAMILY Tubby C-terminal domain-like 84 247 IPR025659 -
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 468 492 IPR036855 GO:0046872
Bma05g01061 631 Pfam Tub family 97 248 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01061 Bma-Chr5:49311291 Bma13g00044 Bma-Chr13:499466 1.47E-13 dispersed
Bma04g01098 Bma-Chr4:24956520 Bma05g01061 Bma-Chr5:49311291 6.72E-145 wgd
Bma05g01061 Bma-Chr5:49311291 Bma06g01512 Bma-Chr6:51579673 1.86E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57360 PF01167 Tub 2.20E-36 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01061 - - vvi:100257896 544.273