Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01061 ATGTCTCTGAAGAGTATAATTCAGGATATGAGGTCTCGATCGCATCGGGTGGTCCAGGATGGCTTACCTCCCGCGGTGAAAGATGGTTTGGAGCAGAGCTGTTGGGCTTACATGCCTCGGGAGCTACTGCGGGAGGTTATTATGCGAATTGAGGCATCTGAGGGTGCTTGGCCGCCGAGGAAGAGCGTGGTTGCTTGTGCTGGAGTGTGCCGGAGTTGGAGAGTTATTACTAAGGAGATCGTCAAAACTCCTGAAACCTCCGGAAAGTTGACGTTTCCGATCTCTATAAAGCAGCCTGGTTCAAGGGAGTCTCTTCTCCAGTGCTTCATAAAACGAAACAGATCCACAAAAACTTATCACCTTTTTCTCAGTTTAACTAGTGCCCTCACTGATGATGGGAAGTTTCTTCTTGCTGCACGAAAATGTAGACGACCTACATGTACAGATTATATCATCTCTATTCGGGCTGATGATATGTCAAAAGGAAGCAGCACCTATGTTGGTAAATTAACGTATGTGCTTAAATGGATGGACTGTCCTCAATTTAATGTATCTGATAGGTCCAACTTTCTCGGAACTAAGTTCACAATATTTGATGGACAGCCGCCCCATGCAAGTGCCAAGATCACAAAAAGTCGCTCCACCAGGCTTGTAAATTTGAAACAAGTTTCACCCAGAATTCCTGTAGGAAACTTTCCAGTTGCTCGCATCTCATATGAATTGAACGTCCTGGGTTCAAGGCAAGTGCCTGGCGGAGTAGAGTACCCAGAGAGATTAGGGCAACCTCTATGCCAGTATTTTATGAAGACTGGAATGTGTAAATTTGGTGCTACTTGCAAGTATCACCATCCAAAACAGGGAGGGGGTCCTGCCATTCCTGCAACATTGAATTATTACGGATACCCACTACGACCGGGTGAAAAAGAGTGTTCTTATTACATCAAAACTGGCCAATGTAAATTTGGCGGGACATGTAAATTCCATCATCCACAGCCAGATAGTGTTCATCTTCCAACGCAATCCCAGGCTCCGAGCATTACCCATGTTCCCTCACCCAATGCGTATCCTTCTGTACAATCTCCATCTCTTCCTTCATCTCAACATTATGGGGTAGTAGTTGCAAGGCCATCTTTGCTGCCAAGTTCATACATTCATAGTGCTTATGGTCCTTTGCTTCTCCCCCAGGGGATGGTTCCTTTTCCAAGTTGGGGTCCTTATCTGACTCCACTAAACCCAGTAGCGTCTCCTAGCACTCAACCTTCTGTTGGTTCGGGATCACTTTATGGAATAACACAGCTTTCTCCTTCTGCCCCTGCATATATTGGATCATATCACACCATACCATCTGTTGGACCCTCAAGCAGTAGCCAAAGAGAAATGTTTCCAGAGAGACCAGGCCAACCAGAATGTCAGCATTACATGAGAACAGGGGATTGCAAATTTGGATCTTCATGTAAATATCATCACCCTCCAGAATTGATTGCTCCAAGAGCCAATGTTGTCCTTGGCCCAATGGGTCTTCCTCTTCGGGGCGCCCCTCAATGCACCCACTTTGCACAACATGGCGTATGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCATCAGGAACCCTTAGTTACAGCCCCTCTGCATCCTCTCTTGTCGATATGCCTGTCGCGCCTTACCCAGTGGGGTCCACGATCGGTACTTTAGCTCCATCTTCATCGTCCTCAGATTTACGGCCTGAAATTGTTTCAGGATCAAGTAAGGATTCTAATTCAGCTAGAGCTTCTTCATCATTGAGTGTATCCTCAGGGTCAACTGGTTCAATCATGTCAAGAAGTGGACCGTTTTCTCAGTCTAGTGTCAAACCGTCTTCCCAGAGTTCGGGCCCCTTCACTAGCTCTGTGTAG 1896 46.52 MSLKSIIQDMRSRSHRVVQDGLPPAVKDGLEQSCWAYMPRELLREVIMRIEASEGAWPPRKSVVACAGVCRSWRVITKEIVKTPETSGKLTFPISIKQPGSRESLLQCFIKRNRSTKTYHLFLSLTSALTDDGKFLLAARKCRRPTCTDYIISIRADDMSKGSSTYVGKLTYVLKWMDCPQFNVSDRSNFLGTKFTIFDGQPPHASAKITKSRSTRLVNLKQVSPRIPVGNFPVARISYELNVLGSRQVPGGVEYPERLGQPLCQYFMKTGMCKFGATCKYHHPKQGGGPAIPATLNYYGYPLRPGEKECSYYIKTGQCKFGGTCKFHHPQPDSVHLPTQSQAPSITHVPSPNAYPSVQSPSLPSSQHYGVVVARPSLLPSSYIHSAYGPLLLPQGMVPFPSWGPYLTPLNPVASPSTQPSVGSGSLYGITQLSPSAPAYIGSYHTIPSVGPSSSSQREMFPERPGQPECQHYMRTGDCKFGSSCKYHHPPELIAPRANVVLGPMGLPLRGAPQCTHFAQHGVCKFGPACKFDHSSGTLSYSPSASSLVDMPVAPYPVGSTIGTLAPSSSSSDLRPEIVSGSSKDSNSARASSSLSVSSGSTGSIMSRSGPFSQSSVKPSSQSSGPFTSSV 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49311291 49323135 - Bma022227.1 Bma05g01061 83145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 513 539 IPR036855 GO:0046872
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Bma05g01061 631 Gene3D Tubby Protein; Chain A 93 251 IPR025659 -
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 464 492 IPR000571 GO:0046872
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 306 333 IPR036855 GO:0046872
Bma05g01061 631 MobiDBLite consensus disorder prediction 565 631 - -
Bma05g01061 631 Gene3D - 463 546 - -
Bma05g01061 631 Gene3D - 257 343 - -
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Bma05g01061 631 PANTHER PROTEIN PHOSPHATASE RELATED 245 623 - -
Bma05g01061 631 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 245 623 - -
Bma05g01061 631 ProSiteProfiles Zinc finger C3H1-type profile. 509 537 IPR000571 GO:0046872
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 259 285 IPR036855 GO:0046872
Bma05g01061 631 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Bma05g01061 631 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bma05g01061 631 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Bma05g01061 631 Pfam F-box domain 38 82 IPR001810 GO:0005515
Bma05g01061 631 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Bma05g01061 631 SMART c3hfinal6 464 491 IPR000571 GO:0046872
Bma05g01061 631 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Bma05g01061 631 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Bma05g01061 631 SMART c3hfinal6 509 536 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 466 491 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 513 535 IPR000571 GO:0046872
Bma05g01061 631 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 285 IPR000571 GO:0046872
Bma05g01061 631 SUPERFAMILY Tubby C-terminal domain-like 84 247 IPR025659 -
Bma05g01061 631 SUPERFAMILY CCCH zinc finger 468 492 IPR036855 GO:0046872
Bma05g01061 631 Pfam Tub family 97 248 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01061 - - - vvi:100257896 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01061 Bma-Chr5:49311291 Bma13g00044 Bma-Chr13:499466 1.47E-13 dispersed
Bma04g01098 Bma-Chr4:24956520 Bma05g01061 Bma-Chr5:49311291 6.72E-145 wgd
Bma05g01061 Bma-Chr5:49311291 Bma06g01512 Bma-Chr6:51579673 1.86E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1052 . . . . . . . . . . . . . . Sed04g1604 Cpe01g00477 Cpe14g00321 Bhi01g01603 Tan01g0774 Cmetu06g1706 . Hepe07g0505 Mch10g0546 . Cla05g01029 Cam05g1125 Cec05g1134 Cco05g1125 Clacu05g1117 Cmu05g1066 Cre05g1141 . . . . . Csa03g01917 . Cme06g01243 . . . . . . Bma05g01061 . . Cmo04g00567 Cmo16g00414 . . . . . . . . . . . . . . . . . . . . . . Chy06g01132 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00585 . 1 426 TUB Transcription Factor Family AT1G76900 70.5 2.3e-172 602.1
Bma05g00558 . 1 430 TUB Transcription Factor Family AT1G76900 69.3 9.0e-169 590.1
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT1G76900 69.2 7.6e-168 587.0
Bma12g01166 . 1 427 TUB Transcription Factor Family AT1G76900 68.8 1.3e-167 586.3
Bma04g00369 BCT 1 447 TUB Transcription Factor Family AT1G76900 65.9 6.7e-164 573.9
Bma12g00381 . 1 421 TUB Transcription Factor Family AT1G76900 68.6 1.9e-163 572.4
Bma12g00402 . 1 421 TUB Transcription Factor Family AT1G76900 68.9 2.5e-163 572.0
Bma04g01707 . 1 433 TUB Transcription Factor Family AT1G76900 66.7 2.6e-160 562.0
Bma04g00212 . 1 413 TUB Transcription Factor Family AT1G76900 51.2 2.5e-118 422.5
Bma12g00381 . 168 421 TUB Transcription Factor Family AT1G25280 73.0 3.1e-100 361.7
Bma12g00402 . 168 421 TUB Transcription Factor Family AT1G25280 72.7 5.2e-100 360.9
Bma05g00558 . 177 430 TUB Transcription Factor Family AT1G25280 70.8 1.3e-98 356.3
Bma05g00585 . 173 426 TUB Transcription Factor Family AT1G25280 70.8 1.7e-98 355.9
Bma01g02507 BCT 173 424 TUB Transcription Factor Family AT1G25280 67.7 4.7e-93 337.8
Bma12g01166 . 173 427 TUB Transcription Factor Family AT1G25280 64.8 4.0e-92 334.7
Bma04g00369 BCT 194 447 TUB Transcription Factor Family AT1G25280 64.8 6.8e-92 334.0
Bma04g01707 . 183 433 TUB Transcription Factor Family AT1G25280 67.9 1.1e-89 326.6
Bma04g01098 . 156 387 TUB Transcription Factor Family AT1G25280 53.6 3.9e-71 265.0
Bma04g00212 . 177 413 TUB Transcription Factor Family AT1G25280 54.7 5.3e-68 254.6
Bma01g02327 BCT 231 463 TUB Transcription Factor Family AT1G25280 53.8 9.3e-65 243.8
Bma04g01098 . 98 387 TUB Transcription Factor Family AT5G18680 63.1 1.9e-98 355.9
Bma01g02507 BCT 112 424 TUB Transcription Factor Family AT5G18680 51.1 8.4e-83 303.9
Bma12g00402 . 111 421 TUB Transcription Factor Family AT5G18680 53.0 9.3e-82 300.4
Bma12g00381 . 111 421 TUB Transcription Factor Family AT5G18680 52.5 1.2e-81 300.1
Bma05g00585 . 112 426 TUB Transcription Factor Family AT5G18680 51.9 3.9e-80 295.0
Bma04g01707 . 123 433 TUB Transcription Factor Family AT5G18680 50.8 1.1e-79 293.5
Bma05g00558 . 112 430 TUB Transcription Factor Family AT5G18680 51.6 1.9e-79 292.7
Bma04g00212 . 114 413 TUB Transcription Factor Family AT5G18680 50.6 1.1e-77 287.0
Bma05g01061 . 98 247 TUB Transcription Factor Family AT5G18680 58.6 1.1e-42 170.6
Bma04g00212 . 1 413 TUB Transcription Factor Family AT2G18280 56.2 4.5e-124 441.4
Bma12g01166 . 1 427 TUB Transcription Factor Family AT2G18280 52.5 9.0e-117 417.2
Bma12g00381 . 1 421 TUB Transcription Factor Family AT2G18280 52.2 2.6e-116 415.6
Bma12g00402 . 1 421 TUB Transcription Factor Family AT2G18280 52.2 4.5e-116 414.8
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.0 2.9e-115 412.1
Bma04g01098 . 1 387 TUB Transcription Factor Family AT2G18280 53.3 9.3e-114 407.1
Bma05g00585 . 1 426 TUB Transcription Factor Family AT2G18280 50.7 7.9e-113 404.1
Bma05g00558 . 1 430 TUB Transcription Factor Family AT2G18280 50.5 3.0e-112 402.1
Bma04g01707 . 1 433 TUB Transcription Factor Family AT2G18280 50.7 6.7e-112 401.0
Bma04g01098 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 1.3e-163 572.8
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.2 1.0e-131 466.8
Bma12g01166 . 1 427 TUB Transcription Factor Family AT2G47900 54.2 1.1e-130 463.4
Bma12g00381 . 1 421 TUB Transcription Factor Family AT2G47900 55.5 1.9e-130 462.6
Bma05g00585 . 1 426 TUB Transcription Factor Family AT2G47900 55.0 9.6e-130 460.3
Bma12g00402 . 1 421 TUB Transcription Factor Family AT2G47900 55.0 1.3e-129 459.9
Bma04g00369 BCT 1 447 TUB Transcription Factor Family AT2G47900 52.6 8.1e-129 457.2
Bma04g01707 . 1 433 TUB Transcription Factor Family AT2G47900 55.6 5.3e-128 454.5
Bma05g00558 . 1 430 TUB Transcription Factor Family AT2G47900 54.2 6.9e-128 454.1
Bma04g00212 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 1.4e-117 419.9
Bma05g01061 . 1 247 TUB Transcription Factor Family AT2G47900 59.3 1.1e-82 303.9
Bma15g00428 . 36 305 TUB Transcription Factor Family AT1G16070 53.3 9.2e-74 273.9
Bma01g02507 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 2.9e-146 515.0
Bma05g00585 . 65 426 TUB Transcription Factor Family AT1G43640 67.4 8.0e-144 506.9
Bma12g00381 . 64 421 TUB Transcription Factor Family AT1G43640 67.6 1.4e-143 506.1
Bma12g00402 . 64 421 TUB Transcription Factor Family AT1G43640 67.6 1.8e-143 505.8
Bma12g01166 . 65 427 TUB Transcription Factor Family AT1G43640 65.3 2.3e-143 505.4
Bma05g00558 . 65 430 TUB Transcription Factor Family AT1G43640 66.1 4.8e-141 497.7
Bma04g00369 BCT 65 447 TUB Transcription Factor Family AT1G43640 61.6 7.7e-139 490.3
Bma04g01707 . 65 433 TUB Transcription Factor Family AT1G43640 63.6 4.0e-135 478.0
Bma04g01098 . 47 387 TUB Transcription Factor Family AT1G43640 51.9 3.3e-105 378.6
Bma04g00212 . 67 413 TUB Transcription Factor Family AT1G43640 50.7 6.0e-99 357.8
Bma04g00212 . 25 413 TUB Transcription Factor Family AT1G47270 63.5 3.0e-133 471.9
Bma01g02507 BCT 48 424 TUB Transcription Factor Family AT1G47270 56.7 1.1e-114 410.2
Bma05g00585 . 48 426 TUB Transcription Factor Family AT1G47270 54.9 1.9e-111 399.4
Bma12g01166 . 31 427 TUB Transcription Factor Family AT1G47270 52.3 1.2e-110 396.7
Bma12g00381 . 1 421 TUB Transcription Factor Family AT1G47270 51.0 6.2e-110 394.4
Bma12g00402 . 1 421 TUB Transcription Factor Family AT1G47270 51.0 1.1e-109 393.7
Bma05g00558 . 48 430 TUB Transcription Factor Family AT1G47270 53.8 2.0e-108 389.4
Bma04g01098 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 1.4e-106 383.3
Bma04g01707 . 31 433 TUB Transcription Factor Family AT1G47270 51.0 1.9e-106 382.9
Bma01g02327 BCT 193 463 TUB Transcription Factor Family AT1G47270 51.5 1.1e-74 277.3
Bma13g00928 . 1 377 TUB Transcription Factor Family AT1G53320 68.1 4.0e-146 514.6
Bma04g01098 . 33 387 TUB Transcription Factor Family AT1G53320 50.1 2.6e-97 352.4
Bma04g01098 . 98 387 TUB Transcription Factor Family AT3G06380 63.1 1.1e-95 346.7
Bma12g00402 . 115 421 TUB Transcription Factor Family AT3G06380 51.9 3.4e-81 298.5
Bma12g00381 . 115 421 TUB Transcription Factor Family AT3G06380 51.3 2.2e-80 295.8
Bma01g02507 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 4.9e-80 294.7
Bma05g00585 . 116 426 TUB Transcription Factor Family AT3G06380 52.1 1.4e-79 293.1
Bma05g00558 . 116 430 TUB Transcription Factor Family AT3G06380 51.4 5.5e-79 291.2
Bma04g01707 . 123 433 TUB Transcription Factor Family AT3G06380 51.4 7.1e-79 290.8
Bma04g00212 . 118 413 TUB Transcription Factor Family AT3G06380 52.8 1.1e-76 283.5
Bma05g01061 . 98 247 TUB Transcription Factor Family AT3G06380 58.7 1.4e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003136 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 1 4 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57360 PF01167 Tub 2.20E-36 CL0395 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01061 Bma_Chr05 FPKM 3.600694 4.570977 1.841861 1.713245 12.956573 13.943543 11.175679 0.247945 0.0 0.0