Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01068 ATGGATACATCACTCTTGCACTCCCGGAATTCCGAATTCTTAACGGAATCTTACTCGGGGTCGCCGGAATACTTTTCTTCCGGGGCCACCACCTTTTTCCCTTTCAACGAAAACGACTCAGAAGAGATGCTTCTTTACAGCCTCATTTCTCCGCCGGAAAACATATTTCCCGAACAAATTCGAGAAGAAACGGATTCATTTTCCAAACCAAATCCAGAAAAGTCATACAGAGGTGTGAGAAAGAGGCCATGGGGAAAATTCGCAGCAGAAATAAGAGACTCGACCAGAAATGGAGTTAGAGTTTGGCTGGGGACGTTCGACAGTGCAGAAGCGGCGGCCATGGCTTACGACCAAGCGGCTTTTTCAGTGAGAGGAACGGCAGCGACTCTCAATTTCCCGGCGGAGAGAGTACAGGAATCGCTTAGAATGATGAACTGTGGCGCCGGGGATGGGTCTCCGGTAATTGCTTTGAAACAGGAGCACTGTTTGAGAAGAAGATCGATGAAGAAAAGGTTGAAAGAGAAAGAATGGTTGAAGATTTAG 543 47.33 MDTSLLHSRNSEFLTESYSGSPEYFSSGATTFFPFNENDSEEMLLYSLISPPENIFPEQIREETDSFSKPNPEKSYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAAMAYDQAAFSVRGTAATLNFPAERVQESLRMMNCGAGDGSPVIALKQEHCLRRRSMKKRLKEKEWLKI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49419731 49420273 - Bma022234.1 Bma05g01068 83152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01068 180 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Bma05g01068 180 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Bma05g01068 180 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Bma05g01068 180 PANTHER DNA-BINDING DOMAIN 28 175 IPR044808 GO:0003700|GO:0009873
Bma05g01068 180 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Bma05g01068 180 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Bma05g01068 180 CDD AP2 74 134 IPR001471 GO:0003700|GO:0006355
Bma05g01068 180 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Bma05g01068 180 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Bma05g01068 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01068 Bma-Chr5:49419731 Bma14g01233 Bma-Chr14:19694001 1.19E-46 dispersed
Bma05g01068 Bma-Chr5:49419731 Bma05g01069 Bma-Chr5:49425431 7.61E-28 tandem
Bma02g00790 Bma-Chr2:42253358 Bma05g01068 Bma-Chr5:49419731 3.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57362 PF00847 AP2 1.50E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01068 K14516 - tcc:18603203 201.83