Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01075 CTGGCTAATCCGTGGTGGGCCGGCCAAGTAGGGCTGCCGATAATCGACTCGACAGCCAATTCATCTCTTATGAAACTCCAACGCGACCGTGAAACCTCCATGAACGATCAAAACAGTAGAGAAGACGATGATGACGAGAGAGAAAACGGATCAGACGAGCCAAGAGAAGGAGCCGTCGAGATCGGAAATCGCAGACCGAGAGGCCGTCCACCCGGATCCAAAAACAAGCCGAAACCACCGATTTTCGTGACCCAAGACAGCCCAAACGCCCTCCGGAGCCACGTTATGGAGGTCGCCGGAGGAGCTGATGTGGCGGAGAGCGTAGCTCAGTTCGCTAGGCGTAGGCAGCGGGGTGTGTGCGTGCTGAGTGCTAGCGGCGCAGTCACGAACGTCACCATACGCCAGCCTGCAACACCTGGTGCTGTGGTGGCACTACATGGACGGTTCGAGATTTTGTCACTGACCGGAGCTTTTTTGCCAGGTCCGGCCCCACCCGGGTCTACGGGTATGACCGTTTATCTCGCCGGAGGGCAAGGACAGGTCGTCGGAGGGAGTGTAGTTGGGTCTCTAGTTGCAGCTGGGCCAGTAATGGTGATTGCCGCAACTTTTTCCAATGCGACTTACGAGAGATTGCCTCTTGAAGACGACGACGGTAATGAAGGCGGAATCGGCAGTACAGGAGCTGGAACCTCCCCTCCGTCGATGGGAGGCAGCGGAGGGAATTTCCCGGGGGGTTTGCCGGATTCTTCTTCTGCCCTTCCCGTTTACAATTTGACTCCAAATCTTATTCCCAATGGAGGTCAACTCGGACATGAAGCTGCTTATGCTACTTGGGCCGGCCATGGGAGACCAAACTACTGA 861 56.21 LANPWWAGQVGLPIIDSTANSSLMKLQRDRETSMNDQNSREDDDDERENGSDEPREGAVEIGNRRPRGRPPGSKNKPKPPIFVTQDSPNALRSHVMEVAGGADVAESVAQFARRRQRGVCVLSASGAVTNVTIRQPATPGAVVALHGRFEILSLTGAFLPGPAPPGSTGMTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFSNATYERLPLEDDDGNEGGIGSTGAGTSPPSMGGSGGNFPGGLPDSSSALPVYNLTPNLIPNGGQLGHEAAYATWAGHGRPNY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49485995 49486855 + Bma022242.1 Bma05g01075 83159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01075 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 217 - -
Bma05g01075 286 PIRSF ESCAROLA 10 286 IPR014476 GO:0003680
Bma05g01075 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 7 286 - -
Bma05g01075 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 205 IPR005175 -
Bma05g01075 286 Gene3D - 91 220 - -
Bma05g01075 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 286 IPR014476 GO:0003680
Bma05g01075 286 MobiDBLite consensus disorder prediction 16 88 - -
Bma05g01075 286 MobiDBLite consensus disorder prediction 211 246 - -
Bma05g01075 286 CDD DUF296 92 175 IPR005175 -
Bma05g01075 286 ProSiteProfiles PPC domain profile profile. 88 224 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01165 Bma-Chr2:53776721 Bma05g01075 Bma-Chr5:49485995 1.44E-71 dispersed
Bma05g01075 Bma-Chr5:49485995 Bma08g01008 Bma-Chr8:49104811 7.75E-77 dispersed
Bma02g00799 Bma-Chr2:42840999 Bma05g01075 Bma-Chr5:49485995 4.33E-81 wgd
Bma04g00746 Bma-Chr4:8030831 Bma05g01075 Bma-Chr5:49485995 1.48E-143 wgd
Bma05g01075 Bma-Chr5:49485995 Bma06g01590 Bma-Chr6:52144263 4.71E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01075 - - qsu:111993894 345.51