Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01076 ATGGATAAAGCTGGTGGATCTGAACATCCGTCTTCTTCTGTTGTTGGAGATGGAGGGGCTAGCTGGAGGCTTAAAGCTTTGAAGCGTGCACAAGAACAAGCTGCTCGAGAAGGAAAAAAACTTGATGAGGCAAGCTATTCTGTCTCTGTGGCATCCCGACGAGCTGCTCCATCTCGAGCCCATTTGCATGCCATAAAACATAGAAGGAGAGGACTGAATAATGAAGACCAATCCGATTCAGACTCACAAAGACAGAAAGATAAGAAATCTAGCAGGGATTATTTGAGGGATGTCTCTGCCAGGCATCCTGAAATGAGGGAGCCTAAGTTTTTGGATTCCTTGTCATGGGGAAAGAGAAAAGTGAGAAAAACTAACGAAGATAGCGTTGTAGTTAGGAGCGAAATGAGTGCAAATCAGATGGCAGCTAAGGCTTTACAGCTTCAATTAAAAGGACAGCACGAAGAAGCCCAAAGGCTTCTGAAAGAATTGGAAGATTTGAAGTCAGCAACAGCTAACACAATTAGTTCCAGTAGACCTCGAGTTGAAGCTAGCACAGCAAGATGTGTTTATCAGGATCCATCCAACAAGAAAAGGGAAGATGATAGTGACAAGCATCTAGCAGAAAGGATAATGCGTAACAAGCAATATAGTAGATCTGGTCAAGCAGATGATGAGTACGACTATGAAGCCGCTCCCAGCAGAAAGTCTCGGAAAAATAGAGGTGCTGATGACCAGAATGCCAACAAGATGAATACTCTCTCAAAACGTATTTTGACTCAAGCTGAGCGATGCAGCTTTTGCTTTGAGAATCCAAACCGGCCAAAACATCTCGTCGTGTCAATAGCAAACTTTACTTATTTGATGTTACCACAATGGCAGCCTATCGTTCCTGGTCATTGTTGTATTTTAACGATGCAGCATGAATCAGCGACTAGGACAGTTGACAAAAATGTATGGGAGGAAATTCGAAACTTCAAGAAGTGTTTGATAATGATGTTTGGGCGACAAGAAAAGGAACTCGTCTTTCTTGAGACGGTCATGGATTTGGCTAAGCAACGTCGCCATTGCTTGATTGAATGCATTCCAATACCTTCGGACAGCGCCAAAGAGGCTCCCTTGTATTTCAAAAAGGCCATTGATGAAGCAGAGGAAGAGTGGAGCCAACACAATGCAAAGAAGCTCATCGACACGAGTGTAAAAGGACTTCGAGGATCAATTCCGGAGCATTTCCCCTACTTTCACGTAGAATTCGGATTGAACAAGGGCTTTGTGCACGTGATCGATGACGAGAAACAGTTTAAAAGCAGCTTCGGCCTAAATGTACTGAGAGGAATGCTTCGCTTGCCGGAGGAAGACATGCACCGTCGTCGTAAATACGAGTCTGTCGAGGTTCAGAGGGAAGCCGTCGCTAATTTCGCTCGGGATTGGGATCCTTTCGACTGGACAAAACAGCTGTGA 1458 44.51 MDKAGGSEHPSSSVVGDGGASWRLKALKRAQEQAAREGKKLDEASYSVSVASRRAAPSRAHLHAIKHRRRGLNNEDQSDSDSQRQKDKKSSRDYLRDVSARHPEMREPKFLDSLSWGKRKVRKTNEDSVVVRSEMSANQMAAKALQLQLKGQHEEAQRLLKELEDLKSATANTISSSRPRVEASTARCVYQDPSNKKREDDSDKHLAERIMRNKQYSRSGQADDEYDYEAAPSRKSRKNRGADDQNANKMNTLSKRILTQAERCSFCFENPNRPKHLVVSIANFTYLMLPQWQPIVPGHCCILTMQHESATRTVDKNVWEEIRNFKKCLIMMFGRQEKELVFLETVMDLAKQRRHCLIECIPIPSDSAKEAPLYFKKAIDEAEEEWSQHNAKKLIDTSVKGLRGSIPEHFPYFHVEFGLNKGFVHVIDDEKQFKSSFGLNVLRGMLRLPEEDMHRRRKYESVEVQREAVANFARDWDPFDWTKQL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49496952 49500787 - Bma022243.1 Bma05g01076 83160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01076 485 PANTHER CWF19-LIKE PROTEIN 2 4 126 - -
Bma05g01076 485 MobiDBLite consensus disorder prediction 1 20 - -
Bma05g01076 485 Pfam Protein similar to CwfJ C-terminus 1 254 376 IPR006768 -
Bma05g01076 485 Pfam Protein similar to CwfJ C-terminus 2 385 482 IPR006767 -
Bma05g01076 485 MobiDBLite consensus disorder prediction 192 244 - -
Bma05g01076 485 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 126 IPR040194 -
Bma05g01076 485 Coils Coil 24 44 - -
Bma05g01076 485 MobiDBLite consensus disorder prediction 171 249 - -
Bma05g01076 485 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 122 485 IPR040194 -
Bma05g01076 485 Coils Coil 142 173 - -
Bma05g01076 485 PANTHER CWF19-LIKE PROTEIN 2 122 485 - -
Bma05g01076 485 MobiDBLite consensus disorder prediction 69 127 - -
Bma05g01076 485 MobiDBLite consensus disorder prediction 31 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01076 K24940 CWF19L2; CWF19-like protein 2 - rcu:8286051 643.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01076 Bma-Chr5:49496952 Bma07g00547 Bma-Chr7:7416418 6.50E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g627 Blo01g00097 . . Bda08g00268 . . . Bma05g01076 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0144 . . . . . . . . . . Bpe05g00866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006081 1 2 1 1 1 1 1 1 1 2 1 1 2 2 2 1 0 1 0 0 1 2 2 1 2 1 2 1 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01076 Bma_Chr05 FPKM 0.737894 0.912411 0.550738 0.691457 1.833175 2.867205 1.706303 0.0 0.0 0.45893