Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01080 ATGCTGGCGAAGTTGCAGCATGTGGATTCGCACTGCCTTCATTCACTCATCTCCGCAAAAACTTCAACTTCTCCCAGCAATGGAGTTTCGGTTTCTCCAGTCGACAACGCCGTTCGATTTCCCAGAAGCAACAGAGAAGGAAAGCATGCAGATGGCACCGAAGGAGATTCCAATAGATTTGGCCGAGTTGACAGACATATTTCGAAGGATGAAAAAGCTGGCGTAGCGGTCGCGATTGAATCCCCCGCGCGAAAGCAGATGTTTCAGGAAACATCGGATGAAGAACGAAGAAAGAACACTATAATTTCGGGTGGAACTGCGGTGAGAAAAGATTTAAGCGTTAAGTTAAAGGTGGGCAATCGAAACGGCTTTGTGGAGAAGGTGCAGCCCAAGTGTTCGAAGAAATGGCTCTGTTATGGTGGATGCATTCCCGCGATTTTGCAAGCATTGGATGACGTTAAGAATTTGGACGAGGCATTTCGGCCTTGGAGTGAGGGGCTGAATGCTAAAGAAAAGAGCGTAATTTTGAAAGAGCAGACTAGTTGGGTGAGAGCCTTGGAGATTTTTCGATGGTTTCAGAGAAAAGGTTGCTACAGATTGAATGTGATTCACTACAACATCATGTTTAGAATTCTTGGTAAGGCTCGGAAATGGTGTTTAGTCGAGACTTTATGGGGAGAATTAAACGCCAAAGGGATTTCTCCCATAAATTCGACGTATGGAACCTTAATAGATGTTTACAGCAAAGGTGGTCTGAAGGAAGAAGCCTTGATTTGGCTTGAACGGATGAACAAACAAGGCATTGAAGCTGATGAGGTTACGATGGGGATTGTCGTTCAATTGTACAAGAAAGCTGGAGAGTTTAAAAAAGCGGAGAGTTTTTTCATGAATTGGTCATCGGGTAAATCATTAAATTATGTTAATAACAATAAATCTGCAGATTCTTCTTTTATGGATAGTTTTCTAAATGCTCATCTTAGTCTGAGCTCCCATACTTATAATACATTGATCGATACTTATGGAAAAGCTGGCCAACTTCAAGAGGCATCTGAAACTTTCAAAAAGATGCTTAACGAAGGAGTGGCTCCAACTACAGTAACTTTCAATACAATGATTCACATTTGTGGTAACCATGGACGCTTAGAGGAAGTGATTTCGCTGATGCAGAAGATGGAGGAACTAAGATGTCCACCCGACACTAGAACGTACAATATTCTTATTTCGCTCCATGCCAAGCATGATGATATAGACATGGCAACCAACTATTTTAGGAAGATGAAGGAGGCTCAGCTGCAGCCCGATAATGTGAGTTGTCGTACCCTCTTATACGCATACTCTATACGACATATGGTTCTTGAAGCCGAAAAAATCATATTGGAGATGGACGAATTGGGTATCGAGATTGATGAATTCACCCAATCGGCCGTCACTCGAATGTACATCGAAGCTGGGAGGCTCAAGGAGTCCATGTTATGGTTTGAGAGGTTTCATCTTGCGGGGAATATGAGTTCTGAATGCTATGCTGCCAACATCGATGCGTATGGTGAGCGTGGGTATTGTTTGGAAGCTGAGAAAGTTTTCGTTAGTTGCCGAGAAGCAAAGAAGCTAACTGTCCTTGAATTTAATGTGATGATTAAAGCTTATGGGGTGGCGAAAGACCATGATAAAGCATGTAAGCTGTTCGATAGCATGGAAAGAAGTAATGTAGTTCCCGATAAATGTAGCTTTAGTACTCTCATACAAATTCTGGTCAATTCAGAACTGCCATTCATGGCTAATTGCTATCTGAAGAAAATGCAGTCACTAGGGCTGGTGAATGACTGCATTCCACATTCTGTAGTGATATCAAGTTATGCAAAATTGGGTCATTTGAAAATGGCAGAAAGCTTGTACAAGGAGATGATTGATTTTGGCATCAAACCAGATATTGTCGTTTATGGTGTGTTGATAAACGCTTTTGCCGACTCAGGCAGTGTTCAAGAAGCTCTTCGGTATATTGATGACATGAAAAAGTCAGGCTTTGAAGGAAATGTCATAATATATAACTCATTGATCAAACTATACACCAGAGTTGGATACTTCAAAGAAGCAGAGGAAACATACAAAATGCTTCGATCATCGGAGGATGGCCCGGCAATATATTCTTCTAATTGTATGATCGATCTTTATAGTGAACGCTCAATGGTGAAAGAGGCGAAGGAGATTTTTGAGAGTGTGCAGAGCAAAGGGGAAGCAAATGAGTTTACTTTCGCAATGATGTTGTGTATGTACAAGAAGCTCGGAAGAATCGAAGAAGCGATAAAAATTGCCAGGAAAATGATGGAATTAGGACTTTTAACCAAGTTATTAAGCTTTAATAACGTGCTCGGATTATACGTTGTGGATGGGAGATTCAAAGAGGCAGTGAAAATATTTGAAATGATGATGAAAGCCAGTATAGAACCTGATGATTGTACATTCAAATCACTCGGGATAGTTTTGTCAAAATGTGGCATTTCAAAGCAAGCTATTAGCAAGCTTGAAGTAATGGCAAAGAGAGACGTTCAGACTGGTTTGCAGGCGTGGAGATCGGTCGTATATTCGGTCGTTGGTGTCAATGGCTATGACGATGTCTAG 2616 41.48 MLAKLQHVDSHCLHSLISAKTSTSPSNGVSVSPVDNAVRFPRSNREGKHADGTEGDSNRFGRVDRHISKDEKAGVAVAIESPARKQMFQETSDEERRKNTIISGGTAVRKDLSVKLKVGNRNGFVEKVQPKCSKKWLCYGGCIPAILQALDDVKNLDEAFRPWSEGLNAKEKSVILKEQTSWVRALEIFRWFQRKGCYRLNVIHYNIMFRILGKARKWCLVETLWGELNAKGISPINSTYGTLIDVYSKGGLKEEALIWLERMNKQGIEADEVTMGIVVQLYKKAGEFKKAESFFMNWSSGKSLNYVNNNKSADSSFMDSFLNAHLSLSSHTYNTLIDTYGKAGQLQEASETFKKMLNEGVAPTTVTFNTMIHICGNHGRLEEVISLMQKMEELRCPPDTRTYNILISLHAKHDDIDMATNYFRKMKEAQLQPDNVSCRTLLYAYSIRHMVLEAEKIILEMDELGIEIDEFTQSAVTRMYIEAGRLKESMLWFERFHLAGNMSSECYAANIDAYGERGYCLEAEKVFVSCREAKKLTVLEFNVMIKAYGVAKDHDKACKLFDSMERSNVVPDKCSFSTLIQILVNSELPFMANCYLKKMQSLGLVNDCIPHSVVISSYAKLGHLKMAESLYKEMIDFGIKPDIVVYGVLINAFADSGSVQEALRYIDDMKKSGFEGNVIIYNSLIKLYTRVGYFKEAEETYKMLRSSEDGPAIYSSNCMIDLYSERSMVKEAKEIFESVQSKGEANEFTFAMMLCMYKKLGRIEEAIKIARKMMELGLLTKLLSFNNVLGLYVVDGRFKEAVKIFEMMMKASIEPDDCTFKSLGIVLSKCGISKQAISKLEVMAKRDVQTGLQAWRSVVYSVVGVNGYDDV 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49560713 49563328 + Bma022248.1 Bma05g01080 83164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 748 778 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 611 643 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 644 677 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 402 434 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 366 400 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 541 572 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 680 707 IPR002885 -
Bma05g01080 871 TIGRFAM PPR: pentatricopeptide repeat domain 784 816 IPR002885 -
Bma05g01080 871 SUPERFAMILY HCP-like 333 532 - -
Bma05g01080 871 Gene3D Tetratricopeptide repeat domain 394 496 IPR011990 GO:0005515
Bma05g01080 871 Gene3D Tetratricopeptide repeat domain 146 314 IPR011990 GO:0005515
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Bma05g01080 871 MobiDBLite consensus disorder prediction 20 61 - -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Bma05g01080 871 PANTHER OS03G0162900 PROTEIN 75 869 - -
Bma05g01080 871 MobiDBLite consensus disorder prediction 41 61 - -
Bma05g01080 871 Gene3D Tetratricopeptide repeat domain 712 863 IPR011990 GO:0005515
Bma05g01080 871 Gene3D Tetratricopeptide repeat domain 538 711 IPR011990 GO:0005515
Bma05g01080 871 Pfam PPR repeat family 541 583 IPR002885 -
Bma05g01080 871 Pfam PPR repeat family 614 654 IPR002885 -
Bma05g01080 871 Pfam PPR repeat family 363 408 IPR002885 -
Bma05g01080 871 Pfam PPR repeat family 784 823 IPR002885 -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Bma05g01080 871 Pfam PPR repeat 332 361 IPR002885 -
Bma05g01080 871 Pfam PPR repeat 238 268 IPR002885 -
Bma05g01080 871 Pfam PPR repeat 436 466 IPR002885 -
Bma05g01080 871 Pfam PPR repeat 749 778 IPR002885 -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 677 711 IPR002885 -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Bma05g01080 871 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 75 869 - -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 781 815 IPR002885 -
Bma05g01080 871 Gene3D Tetratricopeptide repeat domain 315 393 IPR011990 GO:0005515
Bma05g01080 871 Pfam Pentatricopeptide repeat domain 666 725 IPR002885 -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Bma05g01080 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Bma05g01080 871 SUPERFAMILY HCP-like 618 813 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01080 - - - qsu:112001069 1144.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01053 Bma-Chr5:49202444 Bma05g01080 Bma-Chr5:49560713 4.80E-36 dispersed
Bma05g01080 Bma-Chr5:49560713 Bma12g00750 Bma-Chr12:34458106 1.02E-07 dispersed
Bma05g01080 Bma-Chr5:49560713 Bma01g00380 Bma-Chr1:3122549 6.38E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g594 Blo01g00101 . . . . . . Bma05g01080 . Cmo17g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00871 . . . . . . . Cma17g00193 . Car17g00171 Cpe12g00165 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011985 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01080 Bma_Chr05 FPKM 1.639889 1.346226 1.997122 2.6892 4.130555 4.079286 4.858118 6.06013 5.043201 4.663938