Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01085 ATGTCACAGTCTCTTCACTTCTTCACCCCGTCCACTCGGTCCCCAAATCTCGCTCTGCCTAAGCAATCTTGTCCTAAGCCTTTTCCATTTTCATCCAACGCCAACCGCCGTTTTCCGGCCATCTTTAATGGGTTTTCGATAAAGGCGTCTGCTTCTTCGGATCTCGACCCGTCTTCGTTTTCTTCACCGGTTTTAGTGTCTGCTAATGGAACGAGCGTCGGAGCTGGAGTTGTAACACCTGGGGTAAGTGACTACCAACCGGTGGTATCTGATTCGAGCTCCATTGATGTCGATGCTGTAACAGAGACGGAGCTTAAGGAGAATGGATTCAGGAGCACGAGGAGGACGAAGCTTGTTTGCACCATTGGCCCTGCCACTTGTGGGTTCGAGCAGCTTGAGGCTCTCGCAGTCGGAGGAATGAACGTGGCTCGGATCAACATGTGCCACGGCACACGTGAGTGGCATAAGACGGTGATTGAACGGGTGCGGAGGCTCAATGAAGAGAAAGGGTTTGCCGTTGCCATTATGATGGACACCGAAGGTAGTGAAATTCACATGGGGGATCTTGGTGGTGCATCTTCGGCCAAAGCCGAGGATGGTGAAATCTGGACCTTCAGCGTGAGATCTTTTGGTTCCACTCTCCCGGAACGCACCATTCATGTGAACTACGATGGTTTTGCTGAAGATGTTAAATTGGGGGATGAGCTCCTTGTGGATGGAGGAATGGTGAGATTTGAAGTGATCGAGAAGATTGGTCCCGATGTCAAGTGCCTATGCACTGACCCAGGACTATTGTTGCCTCGGGCTAATCTGACATTTTGGAGGGACGGACATTTGGTGCGGGAACGCAATGCCATGCTTCCCACAATTTCCTCCAAGGATTGGTTGGATATCGACTTTGGAATTGCAGAGGGTGTTGAATTCATTGCCATATCTTTTGTCAAGTCTGCTGAAGTGATTAAACATCTTAAGAGCTATATTGCTGCCCGTTCTCGTGATGGTGACATTTCTGTGATTGCAAAGATTGAGAGCATTGACTCCTTAAAGAACTTGGAAGAAATTATCAAAATATCAGATGGAGCTATGGTTGCCAGAGGAGATCTGGGTGCTCAAATACCGTTGGAACAGGTTCCATTAGCACAGCAAAGAATTGTCAATCTATGCAGGCAGCTAAATAAACCAGTCATTGTTGCTTCTCAACTACTTGAATCTATGATTGAATACCCTACACCCACAAGAGCCGAAGTTGCTGATGTTTCAGAAGCTGTCAGACAGCGGGCCGATGCTTTGATGCTCTCTGGTGAATCGGCTATGGGACAATATCCAGAGAAGGCATTGGCTGTTTTAAGAAATGTTAGTGTAAGAATTGAGAAGTGGTGGAGAGATGAAAAGCGCCATGAACAGATGGAACTACCGGCGATTGGATCATCCTTTAGTGACAGTATTTCAGAAGAGATTTGTAATTCGGCTGCCAAAATGGCTAACAATTTGGAGGTGGATGCACTTTTTGTCTATACAAAGACAGGCCAGATGGCATCTCTATTGTCTCGATGCCGACCCGATTGTCCAATCTTTGCATTTACGAGCACAACATCAATGAGGAGGCACCTGAATTTACAGTGGGGGCTCATCCCGTTTCGTTTGAGCTTCTCCGACGACATGGAAACCAACCTTAACAAGACCTTCTCGTTGCTCAAAGCCCGGAATTTAATCAAATCAGGTGATCTTGTCATTGCTGTCTCGGACATGTTGCAGTCTATCCAGGTTATGAATGTTCCATAA 1782 47.08 MSQSLHFFTPSTRSPNLALPKQSCPKPFPFSSNANRRFPAIFNGFSIKASASSDLDPSSFSSPVLVSANGTSVGAGVVTPGVSDYQPVVSDSSSIDVDAVTETELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHKTVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRSFGSTLPERTIHVNYDGFAEDVKLGDELLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVEFIAISFVKSAEVIKHLKSYIAARSRDGDISVIAKIESIDSLKNLEEIIKISDGAMVARGDLGAQIPLEQVPLAQQRIVNLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQYPEKALAVLRNVSVRIEKWWRDEKRHEQMELPAIGSSFSDSISEEICNSAAKMANNLEVDALFVYTKTGQMASLLSRCRPDCPIFAFTSTTSMRRHLNLQWGLIPFRLSFSDDMETNLNKTFSLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49583585 49588097 - Bma022253.1 Bma05g01085 83169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01085 593 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 103 460 IPR015813 GO:0003824
Bma05g01085 593 Gene3D - 182 288 IPR015806 GO:0004743|GO:0006096
Bma05g01085 593 ProSitePatterns Pyruvate kinase active site signature. 336 348 IPR018209 GO:0004743|GO:0006096
Bma05g01085 593 PRINTS Pyruvate kinase family signature 171 187 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 PRINTS Pyruvate kinase family signature 338 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 PRINTS Pyruvate kinase family signature 415 433 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 PRINTS Pyruvate kinase family signature 390 414 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 PRINTS Pyruvate kinase family signature 306 320 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 PRINTS Pyruvate kinase family signature 434 450 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 PRINTS Pyruvate kinase family signature 365 389 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 Gene3D - 457 583 IPR036918 -
Bma05g01085 593 PANTHER PYRUVATE KINASE 86 593 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 Pfam Pyruvate kinase, barrel domain 114 459 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 TIGRFAM pyruv_kin: pyruvate kinase 114 582 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma05g01085 593 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 86 593 - -
Bma05g01085 593 Pfam Pyruvate kinase, alpha/beta domain 484 583 IPR015795 -
Bma05g01085 593 SUPERFAMILY PK C-terminal domain-like 445 591 IPR036918 -
Bma05g01085 593 Gene3D - 114 456 IPR040442 -
Bma05g01085 593 SUPERFAMILY PK beta-barrel domain-like 183 274 IPR011037 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01085 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - jre:109005102 971.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01085 Bma-Chr5:49583585 Bma14g00137 Bma-Chr14:1989055 1.29E-94 dispersed
Bma05g01085 Bma-Chr5:49583585 Bma07g01367 Bma-Chr7:49299899 5.40E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01085 Bma_Chr05 FPKM 62.954445 68.416878 82.710892 80.789131 45.390095 45.849117 48.020386 100.113388 94.241859 96.390038