Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01102 ATGAAAGATGGGTGTACCCAAAAAAGCAAGCTCTCGTGGTCCAAAAAATTGGTCAGAAAATTGTTCAGCTACAAGTGTAAAAGTGAGGATTTCGATTTTCTCCCTGACGATGCTGTCCATAGAGGAGTATCTAGTTCGAGATGTAAAGTTGAATACAGAACTAGCTTCTCTGAGAGGGAGCCATCCACCATCAAGAAGAGTAAAACGGAGAAATTTGGTAGAAAACTAGAGGAGGTCCGGCGGAGGAGAATGAATCTCGATCATCCTCGTATAATAGACGTACACAACTATAGCATTTTTACTGCGACGTGGAATGTGGCCGGAAAATCTCCTCCTAATGATCTTAATCTCGACGATTTGCTTCACTCTGCACCTCCGGCAGACATTTATGTTCTTGGATTTCAAGAGATTGTTCCTTTAAATGCTGGTAACATTCTGGGAACTGAAAACAATGGCCCGGCTAAAAAATGGTTGGCTCTGATTCGAAAGACTCTAAATAATCTTCCCGGAGCGAGTGGGGCCAGTTCCTGCTATAGGCCATCTCCAATCCCGAAGCCAATCATTGAATTAAATGCCGATTTCGAGAGATCATCGAGACAAAAATCGTCTTTTTTCCAACGTCGATCTTTTCAAACGACAAAAAGTTGGAGATTAGATAGCGAGCCATCAACCTCTACACCCCAACTCGATCAAAGATTAAGCGTTTGTGACCGTATAATCTTTGGTCACAGACAAAGTGACTTCGATCCGAGGTTGGGTCGAAGGCCGAGCGATTATAGTAGAGCAAGTGACTTTTCTCGACCAAGCGATTATTCTCGATGGGGTTCATCGGACGATGATAACGGATTGGGGGAATCGCCATCTCCGAGTGCTCTTTCGTTTTCTCCAATTCCACGGGTGTTGAACGAAGACGGATATCGAATTCAAGGCCATTCGAGATATTGCTTAGTAGCAAGTAAGCAAATGGTTGGCGTATTTCTCACAATATGGATGAGGAGTGACTTGAAGGAACACGTTCGTAACATGAAAATATCATGTGTTGGACGAGGATTAATGGGTTACCTTGGAAATAAGGGATCCATTTCTGTTAGCATGTATTTGCATCAAACTAGCTTTTGCTTCATCTGTAGTCATTTAACGTCTGGACAGAAGGAAGGCGATGAGGTTAGAAGGAATCTTGATGTCATGGAGATTCTTAAAAAGACGAGGTTTCCGAGAGTTAATGGCCCGATTGATGAGAGATCTCCCGAAACAATCCTTGAGCATGATCGGATAATTTGGCTCGGAGATTTAAATTATCGAATTGCTTTATCTTACCGCACGGCAAAGGCGCTGGTTGAGATGCAGAATTGGAGGGCATTACTTGGGAATGATCAGCTGCGGATAGAGCAAAAATACGGCCGGGTTTTCGTAGGGTGGAAGGAAGGGAAAATTTATTTCCCACCGACGTATAAGTACTCAACTAATTCAGACCAGTATTCCGGGGATGGCTTGTATCCTAAGGAGAAACGAAGAACTCCCGCCTGGTGTGATCGAATTTTGTGGCATGGAGAAGGGCTTCATCAGTTATCATACGTTCGGGGGGAATCAAGGTTTTCGGACCATCGACCTGTGTGTGGTTTATTTTGGGCTGAGGTCGAGTCGGAGCCTGACCGATTGAAGAAAAGTGCGAGTTTTTCTGGCTCGAGAATTGCAGTCGAGGAGCTTCTTCCATATTCGCATGCATACACGGAGCTTAACTTTTTCTAA 1749 44.08 MKDGCTQKSKLSWSKKLVRKLFSYKCKSEDFDFLPDDAVHRGVSSSRCKVEYRTSFSEREPSTIKKSKTEKFGRKLEEVRRRRMNLDHPRIIDVHNYSIFTATWNVAGKSPPNDLNLDDLLHSAPPADIYVLGFQEIVPLNAGNILGTENNGPAKKWLALIRKTLNNLPGASGASSCYRPSPIPKPIIELNADFERSSRQKSSFFQRRSFQTTKSWRLDSEPSTSTPQLDQRLSVCDRIIFGHRQSDFDPRLGRRPSDYSRASDFSRPSDYSRWGSSDDDNGLGESPSPSALSFSPIPRVLNEDGYRIQGHSRYCLVASKQMVGVFLTIWMRSDLKEHVRNMKISCVGRGLMGYLGNKGSISVSMYLHQTSFCFICSHLTSGQKEGDEVRRNLDVMEILKKTRFPRVNGPIDERSPETILEHDRIIWLGDLNYRIALSYRTAKALVEMQNWRALLGNDQLRIEQKYGRVFVGWKEGKIYFPPTYKYSTNSDQYSGDGLYPKEKRRTPAWCDRILWHGEGLHQLSYVRGESRFSDHRPVCGLFWAEVESEPDRLKKSASFSGSRIAVEELLPYSHAYTELNFF 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49778304 49781245 - Bma022274.2 Bma05g01102 83186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01102 582 Pfam Endonuclease/Exonuclease/phosphatase family 102 535 IPR005135 GO:0003824
Bma05g01102 582 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 5 581 IPR045849 GO:0004445|GO:0046855
Bma05g01102 582 SUPERFAMILY DNase I-like 78 546 IPR036691 -
Bma05g01102 582 SMART i5p_5 260 551 IPR000300 GO:0016791|GO:0046856
Bma05g01102 582 Gene3D Endonuclease/exonuclease/phosphatase 74 181 IPR036691 -
Bma05g01102 582 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 7 5 581 - -
Bma05g01102 582 MobiDBLite consensus disorder prediction 251 296 - -
Bma05g01102 582 MobiDBLite consensus disorder prediction 262 295 - -
Bma05g01102 582 Gene3D Endonuclease/exonuclease/phosphatase 288 565 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01102 - - - tcc:18603026 919.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00832 Bma05g01102 CCT
Bma05g01102 Bma06g01563 CCT
Bma02g00832 Bma05g01102 ECH
Bma05g01102 Bma06g01563 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01102 Bma-Chr5:49778304 Bma13g00016 Bma-Chr13:300797 0 dispersed
Bma03g00024 Bma-Chr3:276641 Bma05g01102 Bma-Chr5:49778304 1.65E-137 transposed
Bma02g00832 Bma-Chr2:45215652 Bma05g01102 Bma-Chr5:49778304 0 wgd
Bma05g01102 Bma-Chr5:49778304 Bma06g01563 Bma-Chr6:51914511 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g531 Blo01g00119 . . . . Bpe14g01201 . Bma05g01102 . . Cma06g01394 Cma14g01727 Car06g01202 Car14g01558 . Cpe08g00272 Cpe03g01450 Bhi01g00786 Tan10g0815 . Lac12g2261 Hepe05g1571 . . . . . . . . . . . Cone7ag0268 Cone4ag0256 Lsi05g01621 Csa02g01143 Chy05g00400 Cme06g00592 Blo02g00531 Blo07g00227 Bda11g00587 Bda13g00109 Bpe05g00894 Bpe13g00597 Bma02g00832 Bma06g01563 . Cmo06g01398 Cmo14g01766 . . . . . . . . . . . . . Cla05g00524 Cam05g0577 Cec05g0587 Cco05g0585 Clacu05g0573 Cmu05g0543 Cre05g0612 . Csa03g01308 Chy06g00561 Cme05g00471
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000262 3 9 4 3 4 4 7 4 4 4 4 4 7 4 4 7 4 8 7 4 4 4 4 4 4 4 4 12 12 2 153