Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01115 ATGAGCAGAAGCAGCAATAATGGCGGTGGTGGGCCGTGTGGAGCCTGCAAGTTTCTGAGAAGAAAATGCGTGAAAGGCTGCGTATTTGCACCGTATTTCGATTCAGAACAAGGCACTGCACATTTTGCAGCAGTTCATAAGGTGTTTGGAGCAAGCAACGCTTCAAAACTTCTGATTCACGTTCCTGTTCATCGACGTCTGGATGCAGTCGTCACTCTCTGTTACGAGGCTTTGGCTAGGGTTAGAGATCCTGTCTATGGCTGCGTTGCCCATATTTTTTCTCTACAACAGCAGGTACTTTACTCCAACAACTTTTTTTTTCCATTATTTTTCTTTGATTTTTTAACTCTAGTCTTGAATTCTTCTGTCTTCTTCGGCCTTTCCCTTCTTCTTTCTTCTTCTTCTTTAACCCGAATAGATGTTTACAGTAAGGACTCTGACAGTGTAATCGACGAACAACTGGTAGGGTTTCTGATTCCATAG 483 43.06 MSRSSNNGGGGPCGACKFLRRKCVKGCVFAPYFDSEQGTAHFAAVHKVFGASNASKLLIHVPVHRRLDAVVTLCYEALARVRDPVYGCVAHIFSLQQQVLYSNNFFFPLFFFDFLTLVLNSSVFFGLSLLLSSSSLTRIDVYSKDSDSVIDEQLVGFLIP 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49926679 49927161 - Bma022289.1 Bma05g01115 83199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01115 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 5 100 - -
Bma05g01115 160 Pfam Lateral organ boundaries (LOB) domain 12 99 IPR004883 -
Bma05g01115 160 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 100 - -
Bma05g01115 160 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01115 Bma-Chr5:49926679 Bma05g01128 Bma-Chr5:50271815 7.73E-55 dispersed
Bma05g01115 Bma-Chr5:49926679 Bma05g01116 Bma-Chr5:49931362 2.10E-49 tandem
Bma04g00795 Bma-Chr4:9060705 Bma05g01115 Bma-Chr5:49926679 1.09E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57367 PF03195 LOB 4.00E-34 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01115 - K21994 cqi:110714113 194.126