Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01116 ATGAGCACGAACCCAGCTGCCAGTAGCGGCGGATCAGGCGGCGGTGGAGGAGGACCCTGCGGAGCCTGCAAGTTCCTGCGTAGAAAGTGTGTGCAGGGGTGCATATTCGCTCCGTACTTCGATTCAGAGCAAGGCGCCCACCATTTTGCGGCGGTTCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGCTCCTCCAACATATTCCAGTCCACAAGCGCCTCGACGCCGTCGTCACCATTTGTTACGAAGCTCAAGCTCGCTTAAGAGACCCTGTTTATGGCTGCGTCGCTCACATATTTGCCCTCCAACAGCAGTTAGTCAATCTTCAAGCGGAGCTCTCCTACTTACAAGCACAATTAGCAACCCTAGAGCTTCTGCCGCCACCTCCTCCACCGCGGCCTCCGCCGCAACTCTCTATTGCCGACCTCCCATCTTCGTCCTCTACTCCAGCCTCCTATGACTTATCGACTCTTTTCGATCAAGTGGTTCAACCATCGTGGACTGTCCAGCACCGGTTACCACGTCCATTTGGGTCCGGCAGCAGCTCGGCCCCGGTCGATGGTGGCGGTGGAGGTGGTGATCTTCAAGCTTTGGCAAGAGAACTTCTTAATAGACATGGCACTTCTACTCCATGTATCAATGCTTCATCGTCCACATCCCTAACTCAATGA 672 54.91 MSTNPAASSGGSGGGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGAHHFAAVHKVFGASNVSKLLQHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQLVNLQAELSYLQAQLATLELLPPPPPPRPPPQLSIADLPSSSSTPASYDLSTLFDQVVQPSWTVQHRLPRPFGSGSSSAPVDGGGGGGDLQALARELLNRHGTSTPCINASSSTSLTQ 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49931362 49932722 + Bma022290.1 Bma05g01116 83200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01116 223 Coils Coil 99 126 - -
Bma05g01116 223 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Bma05g01116 223 MobiDBLite consensus disorder prediction 126 146 - -
Bma05g01116 223 MobiDBLite consensus disorder prediction 173 195 - -
Bma05g01116 223 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Bma05g01116 223 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 208 - -
Bma05g01116 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 6 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00795 Bma-Chr4:9060705 Bma05g01116 Bma-Chr5:49931362 2.83E-63 dispersed
Bma05g01116 Bma-Chr5:49931362 Bma05g01128 Bma-Chr5:50271815 2.07E-161 dispersed
Bma05g01115 Bma-Chr5:49926679 Bma05g01116 Bma-Chr5:49931362 2.10E-49 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57368 PF03195 LOB 4.30E-39 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01116 K21994 - pvy:116128124 286.96