Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01120 ATGGGTCGAGGAAGAGTGGAGCTTAAGAGAATAGAGAACAAAATCAATCGACAGGTTACTTTCTCGAAGAGGAGAAATGGGTTGCTCAAGAAAGCTTATGAGCTTTCTGTTCTCTGCGATGCTGAGGTTGCCTTGATCGTCTTCTCCAGTCGTGGCAAGCTTTATGAGTTTGGAAGTTCTGGGACTAGTAAAACACTAGAGAGATATCAAAGGTGCAGCTTCTCCCATCAAGCCAGCACAGTTGAACGTGAAACACAGAATTGGTATCAAGAAGTAGCAAAGTTGAAAGCTAACTATGAATCACTACAACGTGCTCAAAGGCATTTGCTTGGGGAAGATCTTGGACCTCTAAACGTGAAGGAGCTTCAAAATCTTGAAAAACAGCTTGAAGGAACACTTGCACAAGCCAGGCAAAGAAAGACTCAGATTATTATTGACCAAATGGAAGAGCTTCGCAAGAAGGAACGTCAGCTTGGAGATATTAACAACCAGCTTAAGATGAAGCTTCAAGCAGAAGGGCAAGTACAGAATTTCAAAGCGTTCCAAAGCCTGTGGAGTTCATCAAGTGGAGGAGGAAATGGCCATGGAAACTTTGGTTTGGATCTTTTTCAAACCAACCCTTTGGACTGCCATAGCCACCCTGGACCTGTTCTACAAATTGGGTATCATGATTATGTTCAAGGAGAGGGATCATCCATTCCAAGGAGCATGCCTTGTGAGACAAACTTCGTTCAAGGCTGGCTCCTATGA 750 43.73 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFGSSGTSKTLERYQRCSFSHQASTVERETQNWYQEVAKLKANYESLQRAQRHLLGEDLGPLNVKELQNLEKQLEGTLAQARQRKTQIIIDQMEELRKKERQLGDINNQLKMKLQAEGQVQNFKAFQSLWSSSSGGGNGHGNFGLDLFQTNPLDCHSHPGPVLQIGYHDYVQGEGSSIPRSMPCETNFVQGWLL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49986424 49993220 + Bma022295.1 Bma05g01120 83204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01120 249 Coils Coil 144 168 - -
Bma05g01120 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 233 - -
Bma05g01120 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bma05g01120 249 PANTHER MADS BOX PROTEIN 1 233 - -
Bma05g01120 249 Coils Coil 119 142 - -
Bma05g01120 249 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Bma05g01120 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma05g01120 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma05g01120 249 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma05g01120 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma05g01120 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma05g01120 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma05g01120 249 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma05g01120 249 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bma05g01120 249 Coils Coil 85 112 - -
Bma05g01120 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma05g01120 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01120 Bma-Chr5:49986424 Bma06g01341 Bma-Chr6:50356222 3.57E-71 dispersed
Bma08g00348 Bma-Chr8:6414917 Bma05g01120 Bma-Chr5:49986424 1.46E-48 dispersed
Bma12g00686 Bma-Chr12:29282056 Bma05g01120 Bma-Chr5:49986424 8.04E-52 dispersed
Bma13g00123 Bma-Chr13:1274240 Bma05g01120 Bma-Chr5:49986424 2.58E-43 dispersed
Bma14g02102 Bma-Chr14:44468831 Bma05g01120 Bma-Chr5:49986424 5.87E-28 dispersed
Bma05g01120 Bma-Chr5:49986424 Bma02g00452 Bma-Chr2:6954226 2.59E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57369 PF01486 K-box 1.20E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01120 K09264 - rcu:8258483 368.237