Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01128 ATGAGCACGAACCCAGCTGCCAGTAGCGGCGGATCAGGCGGCGGTGGAAGCGGCGGTGGAGGAGGACCCTGCGGAGCCTGCAAGTTCCTGCGTAGAAAGTGTGTGCAGGGGTGCATATTCGCTCCGTACTTCGATTCAGAGCAAGGCGCCCACCATTTTGCGGCGGTTCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGCTCCTCCAACATATTCCAGTCCACAAGCGCCTCGACGCCGTCGTCACCATTTGTTACGAAGCTCAAGCTCGCTTAAGAGATCCTGTTTATGGCTGCGTCGCTCACATATTTGCTCTCCAACAGCAGTTAGTCAATCTTCAAGCGGAGCTCTCCTACTTACAAGCACAATTAGCAACCCTAGAGCTTCTGCCGCCACCTCCTCCACCGCGGCCTCCGCCACAACTCTCTATTGCCGACCTCCCATCTTCGTCCTCTACTCCAGCCTCCTATGACTTATCGACTCTTTTCGATCAAGTGGTTCAACCATCGTGGACTGTCCAGCACCGGTTACCACGTCCATTTGGGTCCGGCAGCAACTCGGCCCCGGTCGATGGTGGCGGTGGAGGTGGTGATCTTCAAGCTTTGGCAAGAGAACTTCTTAATAGACATGGCACTTCTACTCCATGTATCAATGCTTCATCGTCCACATCCCTAACTCAA 681 54.77 MSTNPAASSGGSGGGGSGGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGAHHFAAVHKVFGASNVSKLLQHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQLVNLQAELSYLQAQLATLELLPPPPPPRPPPQLSIADLPSSSSTPASYDLSTLFDQVVQPSWTVQHRLPRPFGSGSNSAPVDGGGGGGDLQALARELLNRHGTSTPCINASSSTSLTQ 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50271815 50273182 + Bma031229 Bma05g01128 83212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01128 227 Coils Coil 103 130 - -
Bma05g01128 227 MobiDBLite consensus disorder prediction 1 20 - -
Bma05g01128 227 ProSiteProfiles LOB domain profile. 22 124 IPR004883 -
Bma05g01128 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 212 - -
Bma05g01128 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 6 212 - -
Bma05g01128 227 Pfam Lateral organ boundaries (LOB) domain 23 121 IPR004883 -
Bma05g01128 227 MobiDBLite consensus disorder prediction 177 199 - -
Bma05g01128 227 MobiDBLite consensus disorder prediction 130 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01115 Bma-Chr5:49926679 Bma05g01128 Bma-Chr5:50271815 7.73E-55 dispersed
Bma05g01116 Bma-Chr5:49931362 Bma05g01128 Bma-Chr5:50271815 2.07E-161 dispersed
Bma05g01128 Bma-Chr5:50271815 Bma09g00604 Bma-Chr9:43218142 4.00E-55 dispersed
Bma05g01128 Bma-Chr5:50271815 Bma04g00795 Bma-Chr4:9060705 1.62E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57370 PF03195 LOB 4.40E-39 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01128 K21994 - pvy:116128124 293.123