Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01129 ATGGGCCTGATTTCGGGAGTTTTTATGGGTGTGATCTTTGGGATCACGTTGATGGCCGGGTGGCAGCATATGATGAGGTATCGAAGCACCAAGCGAGTTGCCAAGGCAGTTGATATAAAACTTCTTGGCTCACTCAATAGAGAAGATTTAAAGAAGTTATGTGGTGATAATTTCCCTGAATGGATCTCTTTTCCCGTTTATGAGCAGGTGAAATGGCTGAACAAGCATCTGAGCAAATTGTGGCCATTTGTTGCAGATGCAGCAGAGCTGGTGATAAAAGAATCTGTTGAACCACTATTGGAAGAATATCGTCCTCCAGGGATTACTTCGTTGAAGTTCAACAAGTTATCTCTTGGTAATGTGGCCCCAAAAATTGAAGGTATTCGTGTTCAAAGTCTGAAGAAAGGTCAAATCACAATGGATATTGATTTCAGATGGGGTGGTGACCCTAGCATCATTTTAGGCGTTGAGGCTGCACTAGTCGCTTCAATACCCATTCAGCTGAAAGATCTTCAAGTTTTCACCATTATTCGTGTCATCTTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTTGCTCTACTTTCAGAGCCGGAACCGAAAATTGAATATAATCTAAAGGCCGTTGGCGGAAGTTTGACTGCGATACCCGGAATTTCTGATATGATTGAAGATACCGTGCATACAATTGTTACAGATATGCTTCAGTGGCCCCATAGGATTGTTGTTCCATTAGGTGGTATACCTGTTGATACAAGTGATTTAGAACTAAAACCACAAGGAAATCTAACGGTGGTGATAGTAAAAGCAAATGACTTGAAGAACATGGAGATGATCGGAAAATCTGACCCTTATGTTGTTCTGCATATTCGACCACTTTTTAAAGTGAAAACAAAGACAATTGAAAACAACCTGAATCCTGTTTGGAATGAGACATTTGAAATGATTGCAGAGGACAAAGAGACTCAGTCGCTTATCCTTGAGGTATTTGATAAAGATATTGGCCAAGACAAGCGATTGGGAATAGTAAAGCTGCCTTTGATTGACCTGGAAGCCGAAACTACCAAAGAGATCGAATTGAGGCTGCTACCATCTCTCAACACGCTCAAAGTAAAAGATAAAAAGGATAGAGGAACTTTAACTATAAAGGTCTTTTATCATGCGTTTGACAAAGAGGAGCAGCTAGCTGCTTTAGAAGCAGAGAAGAAGATTCTAGCAGCTAGAAAGAAACTGAAGGAAGAGGGCGTTATCGGTAGCACAATGGATGCACTCGAGGGCGCAGCCTCATTGGTTGGCACTGGACTAGGTGCTGGAGCCGGTATGGTTGGCACTGGGTTCAGTGCAGTTAGTAGTGGCCTCTCTAAGGCTGGACGTTTCATGGGTCGGACCATTACGAGCCACTCCAGAAAAAGCGGTTCCTCGACTCCGGTTAATAGCGTCCAAGAAAATGGCGGGGCGAAGCCACTC 1476 43.29 MGLISGVFMGVIFGITLMAGWQHMMRYRSTKRVAKAVDIKLLGSLNREDLKKLCGDNFPEWISFPVYEQVKWLNKHLSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFNKLSLGNVAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILGVEAALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLSEPEPKIEYNLKAVGGSLTAIPGISDMIEDTVHTIVTDMLQWPHRIVVPLGGIPVDTSDLELKPQGNLTVVIVKANDLKNMEMIGKSDPYVVLHIRPLFKVKTKTIENNLNPVWNETFEMIAEDKETQSLILEVFDKDIGQDKRLGIVKLPLIDLEAETTKEIELRLLPSLNTLKVKDKKDRGTLTIKVFYHAFDKEEQLAALEAEKKILAARKKLKEEGVIGSTMDALEGAASLVGTGLGAGAGMVGTGFSAVSSGLSKAGRFMGRTITSHSRKSGSSTPVNSVQENGGAKPL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50285185 50293772 + Bma031230 Bma05g01129 83213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01129 492 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 434 - -
Bma05g01129 492 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 430 488 IPR045050 GO:0008289
Bma05g01129 492 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Bma05g01129 492 Coils Coil 391 411 - -
Bma05g01129 492 MobiDBLite consensus disorder prediction 468 485 - -
Bma05g01129 492 Pfam C2 domain 264 358 IPR000008 -
Bma05g01129 492 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Bma05g01129 492 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 434 IPR045050 GO:0008289
Bma05g01129 492 PRINTS C2 domain signature 328 336 IPR000008 -
Bma05g01129 492 PRINTS C2 domain signature 281 293 IPR000008 -
Bma05g01129 492 PRINTS C2 domain signature 306 319 IPR000008 -
Bma05g01129 492 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Bma05g01129 492 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Bma05g01129 492 Gene3D C2 domain 259 417 IPR035892 -
Bma05g01129 492 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 430 488 - -
Bma05g01129 492 SMART C2_3c 265 362 IPR000008 -
Bma05g01129 492 CDD C2 266 360 - -
Bma05g01129 492 MobiDBLite consensus disorder prediction 468 492 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g01129 Bma06g01388 CCT
Bma02g01017 Bma05g01129 CCT
Bma04g00970 Bma05g01129 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01118 Bma-Chr5:49950637 Bma05g01129 Bma-Chr5:50285185 0 dispersed
Bma05g01129 Bma-Chr5:50285185 Bma06g00980 Bma-Chr6:46360022 5.56E-13 dispersed
Bma05g01129 Bma-Chr5:50285185 Bma01g00306 Bma-Chr1:2521434 1.74E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01129 - - zju:107427230 803.127