Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01166 ATGGAATATGATGTGGTCATAGTTGGAGCAGGACCTGCTGGGCTATCAGCTGCAATAAGGTTGAAGCAAATGTGCCGCGAGAAGGACGTTGATTTGTCTGTGTGTGTCGTCGAGAAAGGTGCTGAAGTAGGTGCTCACATTCTTTCGGGAAATGTTTTTGAGCCTCGAGCATTGGATGAGCTTATCCCAACATGGATGCAGGAAGAGGCACCAATCAGTGTCCCTGTCACTTCTGACAAATTTTGGTTTCTGACAAAAAATCATTCATTTTCACTTCCATGCCCTTTCAATAACAAAGGAAACTATGTTATAAGCTTAAGTCAGTTAGTGCGATGGTTGGGAGTGAAAGCTGAAGAACTGGGAATCGAAATATATCCAGGGTTTGCTGCAAGTGAGATGTTATATGATGGCGACAACAAAGTTATTGGCATTAGAACAAATGATTTGGGCGTAGCTAAAGATGGCTCAAAGAAAAACAATTTTCAGCATGGACGGTTGACACTTTTGGCAGAGGGTTGCCGGGGATCATTATCCGAGAGAATTATTAAAAAATACAGCTTGAGAGAAAAGGGAAACGGCCAGCATCAAACTTTTGCTCTGGGAATTAAAGAGGTTTGGGAGATAGACGAAGCCAAGCATGCGCCTGGTGCTGTGCTTCACACTTTGGGCTGGCCCCTGAATCGAAATACATATGGGGGATCATTTCTGTACCACATGAAAGATAGACAGATTGCGATTGGCCTTGTGGTTGCTCTGAATTATGAGAATCCTTATTTGAGCCCATATGAAGAGTTTCAGAAACTTAAACATCATCCTGCCATCCAGCCACTTCTTGAAGGTGGGAGTTGTCTTCAGTATGGGGCTCGCACCTTAAATGAAGGTGGTTTTCAGTCTATTCCATATCCAGTTTTCCCTGGAGGAGCGATCATTGGATGTTCAGCAGGCTTCTTGAATGTGCCAAAGATAAAGGGTACTCATACTGCAATGAAGTCTGGTAGTATGCTTGCAGCTGAAGCTGCATTTGGTGTGCTTCATGACCAATCAAAAATGGAATTGTATTGGGATGCTTTGCAGGATTCATGGATATGGGAAGAACTCTACCGAGCTAGGAATTACCGTCCAGCATTTGATCATGGGCTTATTCCTGGATTGGCCATTAGTGGTTTAGAACACTATATATTGAAAGGAAGATCTCCTGTTACTCTTAACCATGGAAAGCCTGATCATCAAGCAACACAGTTTGCCCGATTGCAATCTCCCATTCAATATCCAAAGCCGGATGGAATTGTTTCTTTTGATGTTCCAACCTCTCTTCACAGGAGCAACACAAATCACGAACATGACCAACCTGCTCATCTCCGCTTAAGGAACCCCATAATGCCTGAGCAAGTAAATTTTCCAGACTATGCTGGACCAGAGTCACGATATTGTCCTGCACGTGTATACGAGTACATCACAGATGAAAAGGGTGAAGTGAAGTTGCAGATAAATGCTCAAAATTGCCTTCACTGCAAGGCGTGTGATATAAAGGACCCAACGCAGAACATCGAGTGGACGGCGCCGGAGGGAGGCGGAGGTCCAGGCTACTCCGTCATGTAA 1599 44.28 MEYDVVIVGAGPAGLSAAIRLKQMCREKDVDLSVCVVEKGAEVGAHILSGNVFEPRALDELIPTWMQEEAPISVPVTSDKFWFLTKNHSFSLPCPFNNKGNYVISLSQLVRWLGVKAEELGIEIYPGFAASEMLYDGDNKVIGIRTNDLGVAKDGSKKNNFQHGRLTLLAEGCRGSLSERIIKKYSLREKGNGQHQTFALGIKEVWEIDEAKHAPGAVLHTLGWPLNRNTYGGSFLYHMKDRQIAIGLVVALNYENPYLSPYEEFQKLKHHPAIQPLLEGGSCLQYGARTLNEGGFQSIPYPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGSMLAAEAAFGVLHDQSKMELYWDALQDSWIWEELYRARNYRPAFDHGLIPGLAISGLEHYILKGRSPVTLNHGKPDHQATQFARLQSPIQYPKPDGIVSFDVPTSLHRSNTNHEHDQPAHLRLRNPIMPEQVNFPDYAGPESRYCPARVYEYITDEKGEVKLQINAQNCLHCKACDIKDPTQNIEWTAPEGGGGPGYSVM 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50708449 50717481 - Bma022355.1 Bma05g01166 83250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01166 532 SUPERFAMILY FAD-linked reductases, C-terminal domain 198 293 - -
Bma05g01166 532 Gene3D - 433 527 - -
Bma05g01166 532 SUPERFAMILY 4Fe-4S ferredoxins 432 531 - -
Bma05g01166 532 SUPERFAMILY FAD/NAD(P)-binding domain 1 429 IPR036188 -
Bma05g01166 532 Pfam NAD(P)-binding Rossmann-like domain 7 54 - -
Bma05g01166 532 Gene3D - 1 369 IPR036188 -
Bma05g01166 532 PANTHER ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE 1 532 IPR040156 GO:0004174|GO:0022900
Bma05g01166 532 Gene3D - 74 432 - -
Bma05g01166 532 Pfam Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 428 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01166 K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] - csv:101211771 941.799
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1268 Blo01g00193 . . Bda08g00158 . . . Bma05g01166 . . . Cma14g01519 . Car14g01343 Sed12g0692 . Cpe03g01278 Bhi01g01188 Tan10g1201 Cmetu06g1782 . Hepe05g1300 . Lcy11g1259 . . . . . . . . . Cone18ag0851 . . . . . . . . Bda13g00549 Bpe05g00974 . . . . . Cmo14g01554 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012450 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01166 Bma_Chr05 FPKM 10.931018 10.559337 13.382402 13.486469 14.03756 12.526077 14.061351 17.493769 17.009502 18.880058