Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01167 ATGGCAGATTCTGGTGAAAATAATCGGGCAGAACAAGTTTGCAACTTTTTCAGAAAGCCATCAAAAAATAAAAACATTAGAAAAAGGATTATTGAAGATGATGAAAATGGTGATTCGAATTCAGAGAGTTCGATACTGCAAAATCAGAGGAAGAACACTAAGACTGAGAGCAAGCTTTACTTTACTTCCGGACCCTCTAAGAGTTCTCTGTCTACGGACCCAAATGCAGAACAAGAAAAACCCATATTTCAGTTTGAGTCTTCAAAAGAAATCCAAGTGGAACATGATAGCAGAGCAACGGCCACGCTAGAAACCGAGACTGACTTCTCGAAAGATGCTCGAGCTATCCGGGAAAGAGTTCTTAAACAGGCAGAGGAGGCTTTGAAGGGTAAAGGCAAGAGTTCTGGGGATGAGAAACTTTATAAAGGCATTCATGGCTACACAGACTACAAAGCCGGATTCCGAAGGGAGCAAACAGTTGCCAGTGAGAAAGCTGGTGGGTCACATGGACCACTTAGAGCTTCTGCTCACATAAGAGCTTCAGCCAGATTTGATTATCAACCTGACATTTGCAAGGATTACAAAGAGACTGGTTACTGTGGATATGGAGATTCGTGTAAGTTTATGCATGATCGTGGGGATTACAAATCTGGGTGGCAAATGGAGAAGGAATGGGATGAAGCAGAGAAAGCAAGGAAGAGAAGCCTCGCTAAGGGACTGGATGATGGAGGCGACGAAGCCACTGGCCAAAGCGATGAAGAAGAAGAAGATGCTCTGCCCTTTGCTTGTTTCATTTGTCGGCAGCCATTTGTAGACCCTGTTGTAACGAAGTGCAAACACTATTTCTGCGAGCATTGTGCATTAAAGCATCACACGAAAAACAAGAAGTGCTTTGTTTGCAACCAGCCTACGCTTGGGATATTCAATACAGCCCAAGAAATAAAGAAAAGGATGGCTGCCGAAGGTAAATAG 972 43.42 MADSGENNRAEQVCNFFRKPSKNKNIRKRIIEDDENGDSNSESSILQNQRKNTKTESKLYFTSGPSKSSLSTDPNAEQEKPIFQFESSKEIQVEHDSRATATLETETDFSKDARAIRERVLKQAEEALKGKGKSSGDEKLYKGIHGYTDYKAGFRREQTVASEKAGGSHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARKRSLAKGLDDGGDEATGQSDEEEEDALPFACFICRQPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTLGIFNTAQEIKKRMAAEGK 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50725579 50727215 - Bma022356.1 Bma05g01167 83251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01167 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872
Bma05g01167 323 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 1 322 - -
Bma05g01167 323 CDD RING-HC_RNF113A_B 261 301 - -
Bma05g01167 323 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Bma05g01167 323 Pfam Zinc finger, C3HC4 type (RING finger) 262 304 - -
Bma05g01167 323 Gene3D - 183 217 - -
Bma05g01167 323 MobiDBLite consensus disorder prediction 40 82 - -
Bma05g01167 323 ProSitePatterns Zinc finger RING-type signature. 278 287 IPR017907 -
Bma05g01167 323 SMART ring_2 263 300 IPR001841 -
Bma05g01167 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 320 IPR013083 -
Bma05g01167 323 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872
Bma05g01167 323 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Bma05g01167 323 SUPERFAMILY RING/U-box 262 307 - -
Bma05g01167 323 MobiDBLite consensus disorder prediction 24 100 - -
Bma05g01167 323 PANTHER ZINC FINGER PROTEIN 183 1 322 IPR039971 -
Bma05g01167 323 ProSiteProfiles Zinc finger RING-type profile. 263 301 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00864 Bma-Chr4:11368926 Bma05g01167 Bma-Chr5:50725579 1.07E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57373 PF13920 zf-C3HC4_3 1.20E-08 CL0229 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01167 K13127 - csv:101221334 548.125