Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01168 TTCGAAGAAATGAAGAGATTGATAGCTCTAGGATTTGAGGGTTCCGCCAATAAGATTGGTGTTGGAGTCGTAACTTTAGATGGCGACATTTTGTCTAACCCGCGACACACTTACATCACACCTCCTGGCCATGGATTTCTCCCTCGTGAAACTGCACAACACCATTTCCAGCATGTTCTTCCCTTGATCAAATCTGCTCTAGGAACTGCGGGTATTACTCCCGAAGAAATTGACTGCCTTTGCTATACCAAGGGACCTGGAATGGGGGCACCTTTGCAAGTTGCTGCCATTGTTGTGAGAATTCTATCTCAGTTGTGGAAGAAGCCTATTGTTGCTGTTAATCACTGTGTTGCCCATATTGAGATGGGCAGGATCGTGACCGGTGCAGATGATCCTGTTGTTCTGTATGTGAGTGGCGGTAATACACAGGTAATCGCATATAGTGAAGGAAGGTATCGGATCTTTGGCGAGACAATTGATATCGCTGTTGGAAATTGTTTGGATCGATTTGCTCGGGTATTGACTCTCTCTAACGACCCGAGCCCGGGATATAATATCGAGCAGGTATATAAACGATTTTTGTTACTCGATTCATTTTTCCATGAATTGCCGAAAACTCAAATAAGTTGA 630 44.29 FEEMKRLIALGFEGSANKIGVGVVTLDGDILSNPRHTYITPPGHGFLPRETAQHHFQHVLPLIKSALGTAGITPEEIDCLCYTKGPGMGAPLQVAAIVVRILSQLWKKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQVYKRFLLLDSFFHELPKTQIS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50734983 50735612 + Bma022357.1 Bma05g01168 83252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01168 209 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 33 205 IPR000905 -
Bma05g01168 209 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 IPR017861 -
Bma05g01168 209 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 IPR017861 -
Bma05g01168 209 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 IPR017861 -
Bma05g01168 209 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 155 176 IPR017861 -
Bma05g01168 209 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 10 23 IPR017861 -
Bma05g01168 209 SUPERFAMILY Actin-like ATPase domain 106 174 IPR043129 -
Bma05g01168 209 CDD NBD_sugar-kinase_HSP70_actin 10 178 - -
Bma05g01168 209 Gene3D - 9 129 - -
Bma05g01168 209 Gene3D - 131 206 - -
Bma05g01168 209 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED 3 192 IPR034680 GO:0000408|GO:0002949
Bma05g01168 209 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 3 192 IPR000905 -
Bma05g01168 209 SUPERFAMILY Actin-like ATPase domain 9 127 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01168 K01409 OSGEP, KAE1, QRI7; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] - pvy:116135409 366.311
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1229 Blo01g00198 . . Bda08g00155 . . . Bma05g01168 . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0844 Cone11ag0664 . . . . . . . . Bpe05g00977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007916 1 3 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 2 0 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01168 Bma_Chr05 FPKM 0.42614 0.733722 1.454055 1.483229 5.31053 5.039558 5.756777 4.068662 4.229142 4.131396