Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01170 ATGACTCCTGAAAATTCCACTTTCAGCTATAAAGATTCAAGTGCAACCGATATGCTAGGGCGCGAGAGTAAGATGGAATCAACGTATCTTTATATCCAAATGGAATATTGTCCGAGAACTCTCCGCCAGGTTTTTGAGTCGTATCGTTTTGACAAAGAACTGGCCTGGCATTTATTTCGCCAAATTGTGGAGGGATTGGCACACATACACAGCCAAGGAATTATACATCGGGACTTAACTCCAAATAACATTTTCTTTGATGCTCGCAATGATATTAAAATAGGAGATTTTGGTCTTGCTAAGTTCTTGAAGTTGGAACAGTTAGATCAAGATCAAAGTTTCCCTGATACAACTGGAGTTTCTATTGATGGTACTGGTCAAGTTGGTACTTACTTTTATAGAGCGCCTGAAATTGAGCAAGGATGGCCAAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGGATTGTTTTTTTTGAGCTTTGGAATCCATTTGGAACTGCAATGGAAAGAAATATTGTTCTATCTGATTTGAAACAGAAAATTGAACTTCCTCCTGCTTGGGTTGCTGAATTTCCTGAACAAGCATCTTTGTTGAAGCACTTAATGTCTTCAAGTCCAACTGATCGTCCTTCTGCACAAGAACTTCTGCGTCATTCACTTCCTCCTCGAATGGAATCTGAGTTGTTAGACAATATTTTGCGAAGAATGAAAACAACAGAGGATTCAAGTGTATATGATAAAGTTGTGCATGCAATTTTTGATGAAGAGATGCTTGGCATGAAAGATGATCAAGATCTTGGTGAGAAACTTCGGTTGGCTGTAGGGGATGCTTCCTCCATTCAGTACACTGAGGTTCGTGATTATGCTATGGAGGTAGCAAGGGAGGTTTTCAGGCGGCAAGGTGCAAAACACTTGGAGATAAATCCTATGCATTTGTTGGATGAGTGTCCTCTGTTTAATAGGAACACGGTCAAACTTTTGACCAATGGAGGAGACATGCTTGAACTTTGTTATGAGCTGCGCATCCCTTTTCTTGGGTGGGTCATTTCAAACCAGAAATCTTCCTTCAAACGTTATGAAGTAGCGTGTGTCTACAGAAAAGCAATTGGGCACTCACCTCCTAATCGCTACCTTCAAGGTGATTATGACATTATTGGAGGTGCACCGGCAGTGACAGAGGCAGAGGTCATTAAGGTGACAATGGACATTGTCTCGTGTTTTTTCCATTCAAATTCATGTGATATACATTTAAACCACTGGGACCTTCTGGATGCAATTTGGTCCTGGGTAGGAGTGAAGGCTGAGAATAGACATAAAGTGGCTGAGCTTCTTTCAATTATGGGATCTTTACGTCCTCAGTCTTCGGAAAGGAAATCAAAATGGGTTGTGATAAGGCGTCAACTTTTGCAGGAACTCAATTTAGCAGAAGCTGTTGTAAATAGATTGCAAACTGTTGCTTTGAGATTCTGTGATGCAGTAGATATGGCTCTTCCTAGATTGAGAGGAGCCCTGCCAACAGTACATTCAACATGGAAGGCGCTTGATGAATTGTCAGACCTATTTAGGCACTTGACTGTTTGGAGGATGGACAAGAATGTTTACATAGATGTACTGATGCCACCACCAGAGAACTATTATAGAGATTTATTCTTTCAGATATACTTAATGAAGGAGAATCATTCTGGATCACATCTTGAAGGTTCTTTGCTTGCTGTCGGTGGTCGCTATGATTATTTGCTCCATCAAATGTGGACCCGTGATTATAAAACTAATCCTCCAGGTGGTGTTGGGACCAGCATTGCCCTGGAGACTATTATTCAGCAATGTCCTATAGATTTTAAACCTATTAGAAATGAGACTGGCAGCACAGGTGTTCTTGTTTGTTCAAAAGGAGGAGGAGGACTATTGGCACAACGCATGGAACTCGTTGCCGAACTGTGGGAAGAGAACATTAAGGCTGAATTTGTTCCTGCTCCCGATCCAAGCCTGACCGAGCAGTATGAATATGCAAACGAGCATGACATAAAATGTCTCGTTATCATAACAGACACTGGAGTATCATTCAGAGATTCAGTTAAGGTTCGTCATCTCGAACTCAAGAAAGAGAAGGAAATTGAAGGACGAGATCTCGCTAAGTTTTTGTCGGATGCAATGGCAACCCAGTTTAAAAATCCCTCTATTTGGAGTTAA 2193 41.13 MTPENSTFSYKDSSATDMLGRESKMESTYLYIQMEYCPRTLRQVFESYRFDKELAWHLFRQIVEGLAHIHSQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDQSFPDTTGVSIDGTGQVGTYFYRAPEIEQGWPKIDEKADMYSLGIVFFELWNPFGTAMERNIVLSDLKQKIELPPAWVAEFPEQASLLKHLMSSSPTDRPSAQELLRHSLPPRMESELLDNILRRMKTTEDSSVYDKVVHAIFDEEMLGMKDDQDLGEKLRLAVGDASSIQYTEVRDYAMEVAREVFRRQGAKHLEINPMHLLDECPLFNRNTVKLLTNGGDMLELCYELRIPFLGWVISNQKSSFKRYEVACVYRKAIGHSPPNRYLQGDYDIIGGAPAVTEAEVIKVTMDIVSCFFHSNSCDIHLNHWDLLDAIWSWVGVKAENRHKVAELLSIMGSLRPQSSERKSKWVVIRRQLLQELNLAEAVVNRLQTVALRFCDAVDMALPRLRGALPTVHSTWKALDELSDLFRHLTVWRMDKNVYIDVLMPPPENYYRDLFFQIYLMKENHSGSHLEGSLLAVGGRYDYLLHQMWTRDYKTNPPGGVGTSIALETIIQQCPIDFKPIRNETGSTGVLVCSKGGGGLLAQRMELVAELWEENIKAEFVPAPDPSLTEQYEYANEHDIKCLVIITDTGVSFRDSVKVRHLELKKEKEIEGRDLAKFLSDAMATQFKNPSIWS 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50740015 50746958 - Bma022359.1 Bma05g01170 83254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01170 730 PANTHER EIF-2-ALPHA KINASE GCN2 63 730 - -
Bma05g01170 730 SUPERFAMILY Class II aaRS and biotin synthetases 285 608 IPR045864 -
Bma05g01170 730 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g01170 730 Coils Coil 466 486 - -
Bma05g01170 730 Pfam Anticodon binding domain of tRNAs 626 722 IPR024435 -
Bma05g01170 730 PANTHER HISTIDYL-TRNA SYNTHETASE 63 730 - -
Bma05g01170 730 Gene3D Bira Bifunctional Protein; Domain 2 280 612 IPR045864 -
Bma05g01170 730 Pfam Protein kinase domain 25 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g01170 730 SUPERFAMILY Class II aaRS ABD-related 626 720 - -
Bma05g01170 730 Gene3D Transferase(Phosphotransferase) domain 1 21 279 - -
Bma05g01170 730 ProSitePatterns Tyrosine protein kinases specific active-site signature. 74 86 IPR008266 GO:0004672|GO:0006468
Bma05g01170 730 Gene3D - 621 720 IPR036621 -
Bma05g01170 730 SUPERFAMILY Protein kinase-like (PK-like) 26 221 IPR011009 -
Bma05g01170 730 Pfam Histidyl-tRNA synthetase 368 605 IPR041715 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01170 K16196 EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1] - zju:107434870 1147.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01170 Bma-Chr5:50740015 Bma02g00785 Bma-Chr2:41669605 1.30E-18 dispersed
Bma05g01170 Bma-Chr5:50740015 Bma01g00983 Bma-Chr1:9679366 4.49E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1210 Blo01g00199 . . Bda08g00153 . . . Bma05g01170 Cmo08g00205 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0565 . . . . . . . . . . . . . . . . . . . . Car08g00179 . . Cpe17g01092 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006684 2 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66514 PF13393 tRNA-synt_His 3.40E-11 CL0040 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01170 Bma_Chr05 FPKM 16.396078 14.001203 21.4202 11.76331 9.158738 4.855777 10.35714 8.3391 6.26965 9.571113