Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01172 CTCTCTATGGCGGCGAATCTGCAATCTCTCCATTACAGCCACCAGTGTCTTCTGGAGCACCACAGGGCGGAGGCTTATCCCTCCACCTTTTCCTCTATCTTCTTTCTCAAACCCAACAGTGTCAGTAGCTCCATCACCTTTCGATCTCATTCTCTCTCCTCCACCGCATTTTCTCTCTTTTCGGCCACATCCTCCACCTCTTCCACCGTCTCCTTCGATCAGCTCCAGCACCACCTCTCCACCCAAAACTTCCGGCAAGCCGACGAGGAGACTCGTCGGCTCCTCATTGTCCTCGCGGGGGAAGCTGCGAAGAAGAGAAGCTACGTTTACTTCTCCGAGGTCCAGTTTATCTCGGAATCTGACCTCAAAGCCATTGATGAGCTTTGGAAGGAACACAGCGGTGGAAAATTCGGATACAGTTCGCAGAAAAAGATTTTTGAGAAAGTAAACAAAGATTTCACCAGATTTTTCATGAAGGTTGGGTGGATGAAGAAACTGGATACTGAGATTGAGCAGTACAATTACAGATCGTTTCCCACCGAATTCATCTGGGAGCTGAATGATGAAACGCCGGACGGACATTTGCCATTGACGAACGCGCTTAGAGGGACCCAGTTGCTGTGTAAAATTCTGAGTCATCCGGCATTTAAGGATGTGGAAGAGGACACTGGAGACCACGCTAAAGCTGATGAGAAAAATGGAGGATTGAAGAGATTCAGGGATGGGTCGAAACCGTTGAGCAAGAATGTGTTCAAAACGGACTATAGCTTTTGA 774 48.45 LSMAANLQSLHYSHQCLLEHHRAEAYPSTFSSIFFLKPNSVSSSITFRSHSLSSTAFSLFSATSSTSSTVSFDQLQHHLSTQNFRQADEETRRLLIVLAGEAAKKRSYVYFSEVQFISESDLKAIDELWKEHSGGKFGYSSQKKIFEKVNKDFTRFFMKVGWMKKLDTEIEQYNYRSFPTEFIWELNDETPDGHLPLTNALRGTQLLCKILSHPAFKDVEEDTGDHAKADEKNGGLKRFRDGSKPLSKNVFKTDYSF 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50755880 50756653 + Bma022361.1 Bma05g01172 83256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01172 257 Pfam GUN4-like 67 213 IPR008629 -
Bma05g01172 257 Gene3D - 134 221 - -
Bma05g01172 257 Gene3D - 3 133 - -
Bma05g01172 257 PANTHER TETRAPYRROLE-BINDING PROTEIN, CHLOROPLASTIC 4 257 IPR008629 -
Bma05g01172 257 SUPERFAMILY GUN4-like 67 217 IPR037215 -
Bma05g01172 257 CDD GUN4 74 212 IPR008629 -
Bma05g01172 257 MobiDBLite consensus disorder prediction 221 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01172 - - - zju:107409997 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01080 Bma-Chr10:31166448 Bma05g01172 Bma-Chr5:50755880 2.00E-167 transposed
Bma04g00867 Bma-Chr4:11402811 Bma05g01172 Bma-Chr5:50755880 1.45E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1207 Blo01g00200 Blo12g00259 Bda03g00978 Bda08g00150 Bpe04g00905 . . Bma05g01172 Cmo08g00208 Cmo17g00582 . . . . . . . . . . . . . . . . . . . . . Cone14ag0568 . . . . . . . . . . . Bpe05g00981 . . . . . . . Cma17g00602 . Car17g00569 Cpe12g00512 Cpe17g01094 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005926 2 1 2 3 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 2 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01172 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 1.859342 2.120548 1.756837 6.558081 4.9858 4.059052