Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01173 ATGGCTGCAAAGATTTTGGCTAATTTGATCGTGATGGGTTCAGGTATAATGGCTAGAGCTCTGGTTCAGGCCTATCGTCAAGCACTAGCTAATGCCTCAAAAAATGGTGTTGCCCAAGAAACGATGCAGAATACTGTCCGCAGAGCGAGCAAAGTCATGACACATCAAGAAGCTCGACAGATTCTCGGCGTAGCGGAGGAAACTCCATGGGAAGATATCTTGAAGAAATACGACACTTTGTTCGAGAGGAACACCAAGAACGGTAGCTTTTACCTTCAATCAAAAGTTCACCGAGCCAAGGAGTGTTTAGAATCAGTCTATCGAGACAACTACTCGGGTACTCCTACTTGA 351 45.3 MAAKILANLIVMGSGIMARALVQAYRQALANASKNGVAQETMQNTVRRASKVMTHQEARQILGVAEETPWEDILKKYDTLFERNTKNGSFYLQSKVHRAKECLESVYRDNYSGTPT 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50769022 50775713 - Bma022362.2 Bma05g01173 83257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01173 116 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM16-LIKE 1 113 - -
Bma05g01173 116 PANTHER MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE 1 113 IPR005341 GO:0005744|GO:0030150
Bma05g01173 116 Pfam Pam16 1 106 - -
Bma05g01173 116 Gene3D DnaJ domain 53 110 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01173 K17805 PAM16, TIM16; mitochondrial import inner membrane translocase subunit TIM16 - jre:109020904 201.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00869 Bma-Chr4:11412855 Bma05g01173 Bma-Chr5:50769022 4.85E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1160 . . . . . . . Bma05g01173 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002947 3 1 2 2 2 2 1 1 1 2 1 1 2 2 2 2 1 3 2 1 2 1 1 1 1 1 1 4 1 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01173 Bma_Chr05 FPKM 18.29565 19.16861 25.798756 26.763374 19.497059 19.776363 20.559574 34.201603 33.642784 33.052502