Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01176 ATGAGAGCTGCTTTCGCAAATCAGAAGCTACTTTTCAGTCCAAAAAGCGTAATCGCAGCTAGAAATTGTTTCGTGAGAAGTACAATGTCTCAATCAGATCAATCTCCTCATTTCGACAGACCCAGATTGCCGATCAAGAAGGTTTTAGCTAAGCTTCAGGGGGAGGGGGATGGTGCTGTTGTTAGGAGAGGCATTGGAAGGAGTGATTTGAAGAACTTGGATCCTTTCCTCATGTTGGATGATTTCTCAGTGGGTCCCCCTGCTGGATTTCCAGATCATCCACACAGAGGTTCTAAATTTTATATCCATGGATTCTTCTTCTTTGCTCTTTTTCCTATCTTCATCTTCTTCGGCTTTGGATCAGAAAGTAAATTTTATTCTTGTGAATTGCAGGGAGGGATTACTCATCAAGACTTTTGGATGACTGCGGGGAGAGGGATTGTTCACTCTGAAATGCCTGCCAGTGAAGGTGCCCAAACCGGTTTGCAGCTTTGGATCAACTTATCGTCCAAAGACAAAATGATCGAACCGAGATACCAAGAACTTCTGAGCAAAGACATCCCTAGAGCGGAGAAAGACGGAGTTGAAGTCCGAGTTATCGCCGGAGAATCGATGGGAGTCCGGTCTCTGGTCTACACCAGAACTCCGACGATGTACCTCGATTTCACTCTAAAACCGAGGGCTCAGATGCATCAGAAAATCCCCGAATCCTGGAACTCGTTCGTGTACATAATCGAAGGAGAGGGTGTCTTTGGAGCCCCAAATTCATCGACCGTAGCAGCTCATCACGTTCTTGTTCTGGGCATTGGAGACGGTCTGAGCGTGTGGAATCGATCTTCGAAGACTCTGAGATTCGTCTTGATTGCAGGGCAGCCATTGAATGAGACCGTGGTTCAGTATGGACCTTTTGTGATGAACACTCAGGCTGAGATTGATCAAGCCATTGAAGACTACCATTACTGCAAAAATGGGTTTGAATTGGCCAAGAATTGGAGATCTCAATGA 1005 45.77 MRAAFANQKLLFSPKSVIAARNCFVRSTMSQSDQSPHFDRPRLPIKKVLAKLQGEGDGAVVRRGIGRSDLKNLDPFLMLDDFSVGPPAGFPDHPHRGSKFYIHGFFFFALFPIFIFFGFGSESKFYSCELQGGITHQDFWMTAGRGIVHSEMPASEGAQTGLQLWINLSSKDKMIEPRYQELLSKDIPRAEKDGVEVRVIAGESMGVRSLVYTRTPTMYLDFTLKPRAQMHQKIPESWNSFVYIIEGEGVFGAPNSSTVAAHHVLVLGIGDGLSVWNRSSKTLRFVLIAGQPLNETVVQYGPFVMNTQAEIDQAIEDYHYCKNGFELAKNWRSQ 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50899001 50900808 - Bma022367.1 Bma05g01176 83260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01176 334 Gene3D Jelly Rolls 55 98 IPR014710 -
Bma05g01176 334 SUPERFAMILY RmlC-like cupins 44 98 IPR011051 -
Bma05g01176 334 SUPERFAMILY RmlC-like cupins 130 332 IPR011051 -
Bma05g01176 334 PANTHER PIRIN-RELATED 33 334 IPR012093 -
Bma05g01176 334 Pfam Pirin 140 166 IPR003829 -
Bma05g01176 334 Gene3D Jelly Rolls 188 293 IPR014710 -
Bma05g01176 334 PANTHER PIRIN-LIKE PROTEIN 33 334 - -
Bma05g01176 334 PIRSF Pirin 130 332 IPR012093 -
Bma05g01176 334 PIRSF Pirin 40 100 IPR012093 -
Bma05g01176 334 Pfam Pirin C-terminal cupin domain 219 324 IPR008778 -
Bma05g01176 334 CDD cupin_pirin_C 216 292 - -
Bma05g01176 334 Gene3D Jelly Rolls 140 319 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01176 Bma-Chr5:50899001 Bma07g01272 Bma-Chr7:48268993 3.37E-116 dispersed
Bma04g00875 Bma-Chr4:11518220 Bma05g01176 Bma-Chr5:50899001 5.19E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01176 K06911 - pop:7468491 465.307