Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma05g01183 | ATGGGGTTTCCGGTTGGGTATACGGAGGTCTTCTTCCCCAATCTCTTTCTCCATCTACTTTCTCTTCTGGGTTACATCAGAAGCCTCATTTCATCTCTCTTCCACTTTCTGGGTCTCTCTGATTTCGTCGAAACAGACGCCGTTTGGCCCGAAACGCAGAGCCGAGTCTCCGATTCTCCCTCCGTATCGACGCTCCTGATCCGAGAATTGCTGCCGGTCATCAAGTTTTCGGAGCTCGTGGCGGCTTCCGGCGGAGGAGAGTCTCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAAGGAGGGGAGGAGATCAGAAGACTCACAAACTGTAAGCACATTTTCCACAGAGATTGCTTGGACCGGTGGATGGATCATGATCAGAAAACGTGTCCTCTCTGTAGGACACCATTTTTGCCGGACGAGATACAGAACGAGCTAAATCAGCGGCTATGGGCGGCCACCGGAGCATCAGATTTTTACAGTGAATACAGCTCCGTCTGA | 504 | 51.98 | MGFPVGYTEVFFPNLFLHLLSLLGYIRSLISSLFHFLGLSDFVETDAVWPETQSRVSDSPSVSTLLIRELLPVIKFSELVAASGGGESPESCAVCLYEFEGGEEIRRLTNCKHIFHRDCLDRWMDHDQKTCPLCRTPFLPDEIQNELNQRLWAATGASDFYSEYSSV | 167 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 50957905 | 50958408 | - | Bma022373.1 | Bma05g01183 | 83267 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma05g01183 | 167 | Pfam | Ring finger domain | 91 | 135 | IPR001841 | - | |
| Bma05g01183 | 167 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 165 | - | - | |
| Bma05g01183 | 167 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 135 | IPR001841 | - | |
| Bma05g01183 | 167 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 91 | 135 | - | - | |
| Bma05g01183 | 167 | SUPERFAMILY | RING/U-box | 91 | 141 | - | - | |
| Bma05g01183 | 167 | SMART | ring_2 | 92 | 134 | IPR001841 | - | |
| Bma05g01183 | 167 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 165 | - | - | |
| Bma05g01183 | 167 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 142 | IPR013083 | - | |
| Bma05g01183 | 167 | SMART | ringv_2 | 91 | 135 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g00453 | Bma-Chr1:3762198 | Bma05g01183 | Bma-Chr5:50957905 | 1.64E-14 | dispersed | |
| Bma01g01293 | Bma-Chr1:17656612 | Bma05g01183 | Bma-Chr5:50957905 | 5.55E-15 | dispersed | |
| Bma03g00660 | Bma-Chr3:5401017 | Bma05g01183 | Bma-Chr5:50957905 | 1.05E-15 | dispersed | |
| Bma04g00888 | Bma-Chr4:11682113 | Bma05g01183 | Bma-Chr5:50957905 | 9.73E-98 | dispersed | |
| Bma05g01183 | Bma-Chr5:50957905 | Bma14g00604 | Bma-Chr14:6570856 | 2.59E-61 | dispersed | |
| Bma12g00872 | Bma-Chr12:39798997 | Bma05g01183 | Bma-Chr5:50957905 | 4.96E-16 | dispersed | |
| Bma09g00051 | Bma-Chr9:1190164 | Bma05g01183 | Bma-Chr5:50957905 | 3.08E-18 | transposed | |
| Bma13g00642 | Bma-Chr13:15569133 | Bma05g01183 | Bma-Chr5:50957905 | 6.45E-24 | transposed | |
| Bma04g00881 | Bma-Chr4:11591658 | Bma05g01183 | Bma-Chr5:50957905 | 1.16E-96 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma05g01183 | K16281 | - | zju:107432943 | 280.026 |