Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01206 ATGAATAAACTCCCTTCACCAGAAACAGCCATTGACGGCCACGAGAAGCTTCAGACAGTAGACTTATTGCTGCGAATCGACAACGACATAGGAGGTGAAATCGACGGAGATCGAAGCTATGGCCATGGAGATTACAGCGAAAGAGAACATATGTTTGATAAAGTAGTGACACCGAGCGATGTGGGAAAGCTAAATCGTTTAGTAATTCCAAAGCAACACGCGGAGAAATACTTCCCTCTCAATTCTTCATCAAACGAAAAGGGTTTGATTTTGAATTTTGAAGATCGGAACGGAAAATCATGGCGTTTTCGTTATTCTTACTGGAACAGCAGCCAGAGCTACGTGATGACAAAAGGATGGAGTCGGTTTGTGAAAGAAAAGAAGCTAGATGCTGGGGATGTCGTTTCTTTCAGACGGGGAGTAGGCGGGGTTGGAAAGCATCGTCTTTTCATAGACTGGAGGCGCCGCCCAGATGCGCCGCCGCATCTGGCAGCGTTAGCTCATCTTCCTCAGACAGTGAAATGGGGAAGTAGACAGTTGATTCCTCCGTCAATGGCGGCGTACCCTTCCCACCATTACCGCCATTTTCAAACCCCAAATTATAGTACGATCAATCCGCATTATTATCAAAACGGAGCATCCGAATACTTCAATGGAGGAACCTTAGAATCGGGTTCTCTTTATTACTTAAGGCCGTCTTCTTCTTACGCCATTGGAGGACAAAAACAAGGTGGAGAAGCTTCTCCAATAGTGATCGATTCTGTGCCAGTAGTCCATCATGGGAAATCTAAACCTAAACGGCTCAGACTGTTTGGTGTGAATTTGGAGTGTCCTGTACCAGAAGAACCCATTACTACTCCTCACTTTTCAAGCTCCTCTTCAAGTCCTCGACCGCCATTTTTAATCGAGTATTCAGCAAGAGGAAAAGCTTCCTCCTCCCTCCAATGGAAACCGCATTGA 960 45.73 MNKLPSPETAIDGHEKLQTVDLLLRIDNDIGGEIDGDRSYGHGDYSEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLNSSSNEKGLILNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFRRGVGGVGKHRLFIDWRRRPDAPPHLAALAHLPQTVKWGSRQLIPPSMAAYPSHHYRHFQTPNYSTINPHYYQNGASEYFNGGTLESGSLYYLRPSSSYAIGGQKQGGEASPIVIDSVPVVHHGKSKPKRLRLFGVNLECPVPEEPITTPHFSSSSSSPRPPFLIEYSARGKASSSLQWKPH 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51476001 51476960 + Bma022397.1 Bma05g01206 83290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01206 319 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 294 IPR044800 GO:0003700
Bma05g01206 319 ProSiteProfiles B3 DNA-binding domain profile. 52 157 IPR003340 GO:0003677
Bma05g01206 319 SMART B3_2 52 157 IPR003340 GO:0003677
Bma05g01206 319 CDD B3_DNA 50 139 IPR003340 GO:0003677
Bma05g01206 319 Pfam B3 DNA binding domain 52 156 IPR003340 GO:0003677
Bma05g01206 319 Gene3D - 45 163 IPR015300 -
Bma05g01206 319 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 41 294 - -
Bma05g01206 319 SUPERFAMILY DNA-binding pseudobarrel domain 48 158 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g01206 Bma06g01360 CCT
Bma05g01206 Bma06g01360 ECH
Bma04g00935 Bma05g01206 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01562 Bma-Chr4:51641425 Bma05g01206 Bma-Chr5:51476001 8.35E-49 dispersed
Bma05g01206 Bma-Chr5:51476001 Bma14g00089 Bma-Chr14:1257805 1.50E-87 dispersed
Bma04g00935 Bma-Chr4:13347376 Bma05g01206 Bma-Chr5:51476001 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57379 PF02362 B3 8.50E-30 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01206 - - vvi:100259130 291.967