Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01223 ATGGAAAGGTTGTTTCTGATGAATGAGGAATGCAATGCTGCTCCAATTTCCTGGAATTACTCATCGTTTGACGTGGATTTCCAGGAATACGACCTGAATTCTGCGTCTGACCAGCTTCAGAGCTGTTTTTCGGGTGCGGATTGGGAAAATTCGGTTGAACTGTGTGATCCTCTTGAGTCTGCTTTGAGCTCCATTGTTTCTTCTCCGGCGGCGTCCAATGTCGGTGCTAGCTTTAATTCCGGTGGAGATAAACTAATTGTTAGGGAACTAATAGGGAGGCTGGGAAGCATTTACGAAGTCGGCGACATTCCAACGCTGGAGTACATTGGGGGAAAGCAGGACAATACTGACCCCTCGTACTACAGTACACCATTAAATTCTCCCCCGAAGCTCAATCTGTCAGTGGAAAATCGAGAAGCCAAAGGTCATTTGTCATTTTTTGATAGCAATGTTCTAATCCATCCAAGCTTGAAGCCATTTTCTTCGGACCCTGAGTTTGCCGCGAGAGCTGCTATGTTTTCATCCTTAGCCGCTAGAAATGGAGGTCTAAGTAAGGAGATTCCAGCGATTCCTGATATCGAATCTGAAATTGCTGTTCAAGAGCACAGAAAAAGCTCGATTCAGTGTAGAACTTCACTTGGTAAAAAATCAAGAAAGTTGTCGAGATCTCTTGGCCGTGAAAATGCAGAGAGAGGTGACTCTCGAGAAGGATCTTCTTTGTCTGAGCAAATCTCCTGCAGCGAATCTGCCATGAAAGAGAAAGATGAAGTTGATCTAAACCACAGAAAAAGAAAATTGATTTCAAATGTTAACTCAGAAGAAAAACCACCTCCTCCCTCGGCTAAAATCATTGAAGGTAGAAACGAAGGACCAAATCCAGGCGAAACTTCTGCAAGAAAAAATGATAGAACAAAGACGAAGACAGAAACAAATGAAGGTAAAAAATCAGGAGAAGATAAAAATCAGAAGAGTACAAAGCTTCCGGAGCCTCCAAAGGATTATATCCATGTCAGAGCAAGAAGAGGTCAAGCTACAGACAGCCATAGTCTCGCAGAGAGAGTTAGAAGAGAAAAAATCAGCGAAAGGATGAAGTTTCTACAAGATCTTGTCCCTGGTTGCAGTAAGGTGACAGGAAAAGCAGTGATGCTTGATGAAATTATAAATTATGTTCAATCATTACAACGCCAGGTTGAGTTTCTTTCAATGAAGCTGGCATCAGTTCCTCCAAGTACGAATCTGAACATGGAAACTCTTCTATCGAAAGATGTAAGAAAAATCGCCATTAACAGATTCATAGTTCAACATTTTCTTTAA 1314 41.93 MERLFLMNEECNAAPISWNYSSFDVDFQEYDLNSASDQLQSCFSGADWENSVELCDPLESALSSIVSSPAASNVGASFNSGGDKLIVRELIGRLGSIYEVGDIPTLEYIGGKQDNTDPSYYSTPLNSPPKLNLSVENREAKGHLSFFDSNVLIHPSLKPFSSDPEFAARAAMFSSLAARNGGLSKEIPAIPDIESEIAVQEHRKSSIQCRTSLGKKSRKLSRSLGRENAERGDSREGSSLSEQISCSESAMKEKDEVDLNHRKRKLISNVNSEEKPPPPSAKIIEGRNEGPNPGETSARKNDRTKTKTETNEGKKSGEDKNQKSTKLPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVPPSTNLNMETLLSKDVRKIAINRFIVQHFL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51635572 51637257 + Bma022414.1 Bma05g01223 83307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01223 437 MobiDBLite consensus disorder prediction 296 331 - -
Bma05g01223 437 Pfam Helix-loop-helix DNA-binding domain 347 394 IPR011598 GO:0046983
Bma05g01223 437 PANTHER BHLH TRANSCRIPTION FACTOR 21 423 - -
Bma05g01223 437 Gene3D - 340 411 IPR036638 GO:0046983
Bma05g01223 437 CDD bHLH_AtBPE_like 333 418 - -
Bma05g01223 437 SMART finulus 349 399 IPR011598 GO:0046983
Bma05g01223 437 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 423 IPR024097 GO:0006355
Bma05g01223 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Bma05g01223 437 MobiDBLite consensus disorder prediction 208 331 - -
Bma05g01223 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 408 IPR036638 GO:0046983
Bma05g01223 437 MobiDBLite consensus disorder prediction 248 270 - -
Bma05g01223 437 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02239 Bma-Chr1:79519283 Bma05g01223 Bma-Chr5:51635572 1.46E-45 dispersed
Bma05g01223 Bma-Chr5:51635572 Bma06g01401 Bma-Chr6:50785189 3.10E-109 dispersed
Bma09g00469 Bma-Chr9:39247400 Bma05g01223 Bma-Chr5:51635572 5.16E-25 transposed
Bma04g00989 Bma-Chr4:15919755 Bma05g01223 Bma-Chr5:51635572 5.43E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57382 PF00010 HLH 7.60E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01223 - - tcc:18602600 369.007