Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g01223 | ATGGAAAGGTTGTTTCTGATGAATGAGGAATGCAATGCTGCTCCAATTTCCTGGAATTACTCATCGTTTGACGTGGATTTCCAGGAATACGACCTGAATTCTGCGTCTGACCAGCTTCAGAGCTGTTTTTCGGGTGCGGATTGGGAAAATTCGGTTGAACTGTGTGATCCTCTTGAGTCTGCTTTGAGCTCCATTGTTTCTTCTCCGGCGGCGTCCAATGTCGGTGCTAGCTTTAATTCCGGTGGAGATAAACTAATTGTTAGGGAACTAATAGGGAGGCTGGGAAGCATTTACGAAGTCGGCGACATTCCAACGCTGGAGTACATTGGGGGAAAGCAGGACAATACTGACCCCTCGTACTACAGTACACCATTAAATTCTCCCCCGAAGCTCAATCTGTCAGTGGAAAATCGAGAAGCCAAAGGTCATTTGTCATTTTTTGATAGCAATGTTCTAATCCATCCAAGCTTGAAGCCATTTTCTTCGGACCCTGAGTTTGCCGCGAGAGCTGCTATGTTTTCATCCTTAGCCGCTAGAAATGGAGGTCTAAGTAAGGAGATTCCAGCGATTCCTGATATCGAATCTGAAATTGCTGTTCAAGAGCACAGAAAAAGCTCGATTCAGTGTAGAACTTCACTTGGTAAAAAATCAAGAAAGTTGTCGAGATCTCTTGGCCGTGAAAATGCAGAGAGAGGTGACTCTCGAGAAGGATCTTCTTTGTCTGAGCAAATCTCCTGCAGCGAATCTGCCATGAAAGAGAAAGATGAAGTTGATCTAAACCACAGAAAAAGAAAATTGATTTCAAATGTTAACTCAGAAGAAAAACCACCTCCTCCCTCGGCTAAAATCATTGAAGGTAGAAACGAAGGACCAAATCCAGGCGAAACTTCTGCAAGAAAAAATGATAGAACAAAGACGAAGACAGAAACAAATGAAGGTAAAAAATCAGGAGAAGATAAAAATCAGAAGAGTACAAAGCTTCCGGAGCCTCCAAAGGATTATATCCATGTCAGAGCAAGAAGAGGTCAAGCTACAGACAGCCATAGTCTCGCAGAGAGAGTTAGAAGAGAAAAAATCAGCGAAAGGATGAAGTTTCTACAAGATCTTGTCCCTGGTTGCAGTAAGGTGACAGGAAAAGCAGTGATGCTTGATGAAATTATAAATTATGTTCAATCATTACAACGCCAGGTTGAGTTTCTTTCAATGAAGCTGGCATCAGTTCCTCCAAGTACGAATCTGAACATGGAAACTCTTCTATCGAAAGATGTAAGAAAAATCGCCATTAACAGATTCATAGTTCAACATTTTCTTTAA | 1314 | 41.93 | MERLFLMNEECNAAPISWNYSSFDVDFQEYDLNSASDQLQSCFSGADWENSVELCDPLESALSSIVSSPAASNVGASFNSGGDKLIVRELIGRLGSIYEVGDIPTLEYIGGKQDNTDPSYYSTPLNSPPKLNLSVENREAKGHLSFFDSNVLIHPSLKPFSSDPEFAARAAMFSSLAARNGGLSKEIPAIPDIESEIAVQEHRKSSIQCRTSLGKKSRKLSRSLGRENAERGDSREGSSLSEQISCSESAMKEKDEVDLNHRKRKLISNVNSEEKPPPPSAKIIEGRNEGPNPGETSARKNDRTKTKTETNEGKKSGEDKNQKSTKLPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVPPSTNLNMETLLSKDVRKIAINRFIVQHFL | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 51635572 | 51637257 | + | Bma022414.1 | Bma05g01223 | 83307 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g01223 | 437 | MobiDBLite | consensus disorder prediction | 296 | 331 | - | - | |
Bma05g01223 | 437 | Pfam | Helix-loop-helix DNA-binding domain | 347 | 394 | IPR011598 | GO:0046983 | |
Bma05g01223 | 437 | PANTHER | BHLH TRANSCRIPTION FACTOR | 21 | 423 | - | - | |
Bma05g01223 | 437 | Gene3D | - | 340 | 411 | IPR036638 | GO:0046983 | |
Bma05g01223 | 437 | CDD | bHLH_AtBPE_like | 333 | 418 | - | - | |
Bma05g01223 | 437 | SMART | finulus | 349 | 399 | IPR011598 | GO:0046983 | |
Bma05g01223 | 437 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 21 | 423 | IPR024097 | GO:0006355 | |
Bma05g01223 | 437 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 343 | 393 | IPR011598 | GO:0046983 | |
Bma05g01223 | 437 | MobiDBLite | consensus disorder prediction | 208 | 331 | - | - | |
Bma05g01223 | 437 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 341 | 408 | IPR036638 | GO:0046983 | |
Bma05g01223 | 437 | MobiDBLite | consensus disorder prediction | 248 | 270 | - | - | |
Bma05g01223 | 437 | MobiDBLite | consensus disorder prediction | 220 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02239 | Bma-Chr1:79519283 | Bma05g01223 | Bma-Chr5:51635572 | 1.46E-45 | dispersed | |
Bma05g01223 | Bma-Chr5:51635572 | Bma06g01401 | Bma-Chr6:50785189 | 3.10E-109 | dispersed | |
Bma09g00469 | Bma-Chr9:39247400 | Bma05g01223 | Bma-Chr5:51635572 | 5.16E-25 | transposed | |
Bma04g00989 | Bma-Chr4:15919755 | Bma05g01223 | Bma-Chr5:51635572 | 5.43E-176 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57382 | PF00010 | HLH | 7.60E-06 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g01223 | - | - | tcc:18602600 | 369.007 |