Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01242 ATGGAGTTTAAGTTGAGGAAGACGAAGGAGGAGGTGATGGAGATTGCCCGGAATATGGTAAAGTTGGCTCGGAGCTTGGGGTGTGAGGATGTGGAGTTCAGCCCCGAGGATGCCGGAAGGTCGGACAGACATTTCTTGTATCAAATTTTGGGTGAAGTTATTAAAGCTGGAGCAACAACTCTCAACATACCTGACACTGTTGGTTATACTATGCCCGGCGCATGTGCAGGTGCGAGGCAGTTAGAAGTAACAATTAATGGGATTGGTGAAAGAGCCGGTAATGCTTCACTAGAGGAGGTTGTAATGTCCTTAAAATGTCGTGGAGACCACGTGCTTGGAGGTCTTTATACAGGAATCAATCCAAAACACATCTTTTTTACAAGCAAAATGGTAGAAGAGTACACTGGATTGCAAGTTCAACCACATAAAGCGATCGTAGGGGCTAATGCTTTTGCTCATGAAAGTGGAATCCATCAGGATGGAATGCTCAAACACAAAAGTACCTATGAAATTATATCTCCTGAAGATATCGGTTTTGAGCGGTCAAATGAGGCTGGTATTGTTCTTGGGAAACTCAGTGGGCGTCATGCTTTGAAAAAGAGGCTTGAAGAGCTTGGTTATGAGCTTGAGTCTGAGCAACTTCAGAATATTTTCTGGCGCTTCAAAGGAGTCGCCGAGCGGAAGAAGAGAATTACAGATGCTGATCTTAGAGCATTGGTATCTGATGAAGTTTTTCAGCCAGAAGTTGTTTGGAAACTTTGCGATCTGCAGGTAACTTGTGGAACTCTGGGCCTCTCTACTGCCACTGTTAAGCTAGTTGACTTCACTGGGAGAGAGCAAGTTGCTTGTTCTATTGGAACTGGACCAGTGGATTCGGCCTACAAGGCTGTTGATCTCATTGTGAAGGAACGAGTCACCCTTCTCGAGTATTCAATGAATTCGGTCACAGAAGGCATTGATGCGATTGCCACCACCCGAGTCGTGATTCGTGGAGAAAATGGTAACATGTCCACTCACGCTTTAACCGGAGAAACCTTTCAACGAACATTTAGTGGAATTGGAGCGGGAATGGACATTGTCGTTTCAAGTGTCAAGGCCTACCTTGGGGCGTTAAACAAAATGCTTGGTTTCAAGGAGAATCCCACGACCATAACTGCCGGAGAAAGAAAACCCGTGTCAGCTTGA 1185 45.4 MEFKLRKTKEEVMEIARNMVKLARSLGCEDVEFSPEDAGRSDRHFLYQILGEVIKAGATTLNIPDTVGYTMPGACAGARQLEVTINGIGERAGNASLEEVVMSLKCRGDHVLGGLYTGINPKHIFFTSKMVEEYTGLQVQPHKAIVGANAFAHESGIHQDGMLKHKSTYEIISPEDIGFERSNEAGIVLGKLSGRHALKKRLEELGYELESEQLQNIFWRFKGVAERKKRITDADLRALVSDEVFQPEVVWKLCDLQVTCGTLGLSTATVKLVDFTGREQVACSIGTGPVDSAYKAVDLIVKERVTLLEYSMNSVTEGIDAIATTRVVIRGENGNMSTHALTGETFQRTFSGIGAGMDIVVSSVKAYLGALNKMLGFKENPTTITAGERKPVSA 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51798059 51803078 - Bma022433.1 Bma05g01242 83326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01242 394 Pfam LeuA allosteric (dimerisation) domain 231 375 IPR013709 GO:0003852|GO:0009098
Bma05g01242 394 Gene3D Aldolase class I 1 73 IPR013785 -
Bma05g01242 394 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 255 374 IPR036230 -
Bma05g01242 394 PANTHER HOMOCITRATE SYNTHASE-RELATED 1 72 - -
Bma05g01242 394 PANTHER HOMOCITRATE SYNTHASE-RELATED 70 378 - -
Bma05g01242 394 SMART LeuA_dimer_2 230 375 IPR013709 GO:0003852|GO:0009098
Bma05g01242 394 Coils Coil 195 215 - -
Bma05g01242 394 PANTHER 2-ISOPROPYLMALATE SYNTHASE A-LIKE ISOFORM X1 1 72 - -
Bma05g01242 394 PANTHER 2-ISOPROPYLMALATE SYNTHASE A-LIKE ISOFORM X1 70 378 - -
Bma05g01242 394 ProSiteProfiles Pyruvate carboxyltransferase domain. 1 125 IPR000891 GO:0003824
Bma05g01242 394 Gene3D - 138 253 - -
Bma05g01242 394 Gene3D Aldolase class I 74 137 IPR013785 -
Bma05g01242 394 SUPERFAMILY Aldolase 2 149 - -
Bma05g01242 394 Pfam HMGL-like 75 131 IPR000891 GO:0003824
Bma05g01242 394 Pfam HMGL-like 2 74 IPR000891 GO:0003824
Bma05g01242 394 Gene3D - 259 375 IPR036230 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01242 K01649 leuA, IMS; 2-isopropylmalate synthase [EC:2.3.3.13] - jre:108987587 640.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00999 Bma-Chr4:16252278 Bma05g01242 Bma-Chr5:51798059 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1142 . . . . . . . Bma05g01242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002187 1 1 2 2 2 2 3 3 3 1 2 2 4 1 2 3 2 2 2 2 1 3 2 3 2 2 2 2 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01242 Bma_Chr05 FPKM 138.737305 152.630127 130.812759 136.094162 58.48555 64.182854 60.56786 274.314667 256.542084 254.221344