Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01243 ATGGAGTCTTCATTGTCTTTTATGACATTCAAGGGCTCTGTAATTGAAGCTATAAGTGAGGCAAAAAACCAGAGGAAATTGTTTGTTGTCTATATCTCAGGTGATGATGCAGATACAAGTAGTTTGGAACGATACACGTTGAGAAGCTTAAACGTAGTTCAATTCGTGTCGAAATACTGCATTTTCTTGCATCTTCCTGCCGAAAGTGCTGATGGAACACAATTTTCTGCTATATACCCGCAGAAATCTATTCCGTCTATAACGGTTGTTAGATTCAATGGCGTGAAACTCTGGCAACATGAGGGATATATCGATCCCGAGGCTTTGGCATCCAACTTAGAGAAGGAGTGGTTGAATCTTCATATCCAGGAAACAACGGCTACTGTCGTGACGACAACATTGGCTTCAAAGTCATTTGAGGTTGCAACTAATTCTACTCCGGGGACTTCGACTTCTACCTCGTCTCATTCAAGAACTTTCTCTGGTCCGACTCTATCTTGCGAGGATCGTCTTCAAATTCCCGAGAATAAACCAAAACCGACTTCTCAAAAAGTAGATGATGGCAAAATGTCTGAACCAACCATTTTGATCGGTAAGGAGTCAGAATCATTTAATACGAGTAAGCTCAAGAAAGTCGGCAACGAAGAGTTCCCGTCTTCTACTGAAGCAGCCGAAGATCATCTGGATAGAGATACTCTCGTGGGCTATGTCAACAACTCTGAAGATGATCATCCGGGTCCCTCCAACGTTTTAGATTTTCGTTCTGATAATGATCCATCTGAACCAGGAGGTTCTGTACCAACTTCAATCGAGGATAAAATGGAAGAGTATAAACGAGCCGAAGGGGTGGGGAGGAAGACGAAAGATAAATCTATGATTCTTACTCGGTTCGATAAATTAAACGATGCTCATCTAAACATTCGACTGGCAAATGGCAGTAGCCTTCAACAGAAGTTTTCTTTGACAAGCACCTTGCAAATGGTCAAAGAATACGTAGATAACAATCAAGCAGCTGACTTTGGCTCCTATGATTTAGCGATCCCTTATCCTCGCAAAGTTTTCGATAATCAAGAGTTGAGCAAATCACTATCTGAGTTGGGGCTGTTTAATAGGCAAGCACTGGTTGTGGTTCCACACCAGAGGCCGGCAAGCGATGGCAAAAGAGGATTCTCTTCTTCAATACGAGCAACTTCGAACAATACTGACAATTCAGCCGAGATTGGGGAGGGATATTTTGCATTCGCTAAATGGATTTTATCTTATGCAAATCCTTTCGCCTATCTCGGTGGTGCTGCTTCTTCGCAAAATGCTGAACAAGAATCTCGAAGTAGAATTGGTGAATATGGTGAGTTTACAAAAATGAAGCGCGAGTTATTTATCGGGCGTTTTTTCAGTTAG 1398 42.06 MESSLSFMTFKGSVIEAISEAKNQRKLFVVYISGDDADTSSLERYTLRSLNVVQFVSKYCIFLHLPAESADGTQFSAIYPQKSIPSITVVRFNGVKLWQHEGYIDPEALASNLEKEWLNLHIQETTATVVTTTLASKSFEVATNSTPGTSTSTSSHSRTFSGPTLSCEDRLQIPENKPKPTSQKVDDGKMSEPTILIGKESESFNTSKLKKVGNEEFPSSTEAAEDHLDRDTLVGYVNNSEDDHPGPSNVLDFRSDNDPSEPGGSVPTSIEDKMEEYKRAEGVGRKTKDKSMILTRFDKLNDAHLNIRLANGSSLQQKFSLTSTLQMVKEYVDNNQAADFGSYDLAIPYPRKVFDNQELSKSLSELGLFNRQALVVVPHQRPASDGKRGFSSSIRATSNNTDNSAEIGEGYFAFAKWILSYANPFAYLGGAASSQNAEQESRSRIGEYGEFTKMKRELFIGRFFS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51804480 51807025 - Bma022434.1 Bma05g01243 83327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01243 465 SUPERFAMILY Thioredoxin-like 9 115 IPR036249 -
Bma05g01243 465 MobiDBLite consensus disorder prediction 143 166 - -
Bma05g01243 465 Gene3D Glutaredoxin 11 118 - -
Bma05g01243 465 CDD UBX 304 377 - -
Bma05g01243 465 ProSiteProfiles UBX domain profile. 298 376 IPR001012 GO:0005515
Bma05g01243 465 MobiDBLite consensus disorder prediction 172 186 - -
Bma05g01243 465 Pfam UBX domain 301 377 IPR001012 GO:0005515
Bma05g01243 465 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 11 1 456 - -
Bma05g01243 465 SMART ubx_3 295 378 IPR001012 GO:0005515
Bma05g01243 465 MobiDBLite consensus disorder prediction 236 270 - -
Bma05g01243 465 SUPERFAMILY Ubiquitin-like 298 378 IPR029071 -
Bma05g01243 465 Gene3D - 296 379 - -
Bma05g01243 465 MobiDBLite consensus disorder prediction 143 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01243 K24348 UBXN1_4; UBX domain-containing protein 1/4 - jre:108987588 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00807 Bma-Chr5:45410511 Bma05g01243 Bma-Chr5:51804480 6.26E-07 dispersed
Bma05g01243 Bma-Chr5:51804480 Bma12g00100 Bma-Chr12:1659123 9.20E-08 dispersed
Bma04g01000 Bma-Chr4:16262373 Bma05g01243 Bma-Chr5:51804480 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1143 . . . . . . . Bma05g01243 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010429 1 1 2 2 0 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01243 Bma_Chr05 FPKM 17.035048 19.074923 8.079282 8.067967 22.599758 19.101374 21.063557 6.795887 7.234102 6.875982