Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01261 ATGGCTGCCGATTTCGGCTCCTCTCGGTCTCAACCCAAGCCTCGCCTTAAAGGCGTCGTCTTTGACATGGACGGAACCTTGACGGTCCCGGTGATTGATTTTCCGGCGATGTACAGAGCCGTCCTCGGGGACGAAGAGTATCGGAGAATCAGAGCTGAAAATCCTTCTGGGATTGATATTTTGCACCACATTGAGGGTTGGAGCTCTGAAAAGCAGCAGAAAGCTTACGAAACTATCGCCGATTTCGAGCGGGAGGGGCTTGATCGCCTCCAAATCATGCCTGGCGCAGCCGAGCTTTGTAGCTTTCTCGATTCGAAAAAATTGAGGAGGGGATTAATCACTCGCAATGTCAAGGCATCGGTCGAGCTGTTTCATCAAAGATTTGGGTTGATCTTTTCTCCGGCCCTAAGCAGGGAATATCGGCCTTACAAACCCGACCCGGCCCCGCTCCTCCACATTTGTTCGTCGTGGGAAGTTCACCCGAGCGAAGTAATGATGATAGGCGATAGCCTCAAAGACGATGTGCCCTGCGGGAAGAGGGCCGGAGCGTTTACATGTTTGCTCGACGAAACGGGGAGGTACAACTCTCCGAATTACGACAAGGTGGAATTAAATCCAGATTTTAAAGTGTCGTCACTTACCGAAGTGCGATCCTGTCTGGAAGCGTATTTTGAGCTGGCTCCGTGA 687 51.67 MAADFGSSRSQPKPRLKGVVFDMDGTLTVPVIDFPAMYRAVLGDEEYRRIRAENPSGIDILHHIEGWSSEKQQKAYETIADFEREGLDRLQIMPGAAELCSFLDSKKLRRGLITRNVKASVELFHQRFGLIFSPALSREYRPYKPDPAPLLHICSSWEVHPSEVMMIGDSLKDDVPCGKRAGAFTCLLDETGRYNSPNYDKVELNPDFKVSSLTEVRSCLEAYFELAP 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51958179 51959831 - Bma022453.1 Bma05g01261 83345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01261 228 PANTHER 4-NITROPHENYLPHOSPHATASE-RELATED 9 221 - -
Bma05g01261 228 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 19 182 IPR006439 -
Bma05g01261 228 Gene3D - 19 192 IPR023214 -
Bma05g01261 228 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 16 222 - -
Bma05g01261 228 SUPERFAMILY HAD-like 13 222 IPR036412 -
Bma05g01261 228 CDD HAD_like 96 188 - -
Bma05g01261 228 Pfam Haloacid dehalogenase-like hydrolase 19 186 IPR041492 -
Bma05g01261 228 SFLD Haloacid Dehalogenase 16 222 - -
Bma05g01261 228 Gene3D - 29 90 - -
Bma05g01261 228 PANTHER OS02G0816100 PROTEIN 9 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01261 - - - fve:101312335 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01261 Bma-Chr5:51958179 Bma09g00729 Bma-Chr9:45537951 2.14E-167 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g807 . . . Bda08g00010 . . . Bma05g01261 . . Cma06g01286 Cma14g01854 Car06g01104 Car14g01661 . Cpe08g00364 Cpe03g01553 . . . . . . . . . . . . . . . . Cone7ag0359 Cone4ag0371 Lsi05g01782 . . Cme06g00439 . . . . Bpe05g01116 . . . . Cmo06g01291 Cmo14g01899 . . . . . . . . . . . . . Cla05g00398 Cam05g0434 Cec05g0440 Cco05g0439 Clacu05g0429 Cmu05g0410 Cre05g0471 . Csa03g01154 Chy06g00418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006077 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01261 Bma_Chr05 FPKM 1.211738 1.432763 40.183475 35.879173 8.992089 8.563151 9.729724 14.589983 12.757133 16.078588