Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01262 ATGGCCGCCGAGCAAAATTCTGCATTTTCTTCCCCTATGAAGAAGTGTAAGAGGAAGAGGAAACGAACCCAGATGGATCCTGAAGTGAAACGCCTTGATTCACTCACCTGGAAATCCTCTTTCCCTGCCAGCGATCCCTTTTCGATGTTCATTGGTTCTAACGAACTGGAAGGAGGGTTTCTTTCATTAGAAGAGATTGACGAGGCCCAATATGGCTTGGAAGTTCCCGAAATTGTAACTGGTGGCAGTAAGTTCGAAAAAATTACTATGATAACGAAGAAACAGGACAATGGCAATGAATGCGAGGGCGGTGATAAGAGTCGAGGTAAAGTGGGAGAGAAAGTGGAGCGAGAAGAGAATGTTGAGACTACAAAAAAGAGGAAGAAGAATAATAATTTAAACAAAATCCCAGAAGAGGAGAACCTAGTCGGTAGAGATGTTGATGGCTGTAGTAGCAATGAGACTGAGTTAAAGTTTGAAGAAAAAATGGCGGACGAAAATAATGCCGAGAAAAGAAAGAAGAAAAAGAAAAAGAAAAAGAAGATGAATAAGGGGACAGAGAAAACTTACGAGAACAATGAATTTGAAGGGAAGCCAGTGGATGAAACTGAATTTTATGCATGGAACGAGTTGAGACTTCATCCTCTGCTCATGAACTCAATCTACAAACTTGGATTCAAGGAACCCACACCGATACAGAAAGCTTGCATTCCTGCTGCTGCTCACCAGGGGAAGGATGTTGTTGGTGCGGCAGAGACTGGATCAGGAAAGACACTAGCTTTTGGGCTGCCAATTTTGCAACGGCTCTTGGAGGAACAGGAAAAAGCTGGCAGAATTAAGGAAGGAAAGGAAGAAGAAGAAAATGATAATGCTTTGAGAGGCTTACGTGCTCTTATAATTACTCCAACAAGGGAACTAGCTCTTCAGGTCGCTGATCATCTCAAGGCAGTTGCAGAGGGCACAAATACTAGAGTAGTTCCTATTGTTGGTGGGATGTCAACAGAAAAACAGGAAAGACTTCTAAGATCAAGACCTGCGATTATTGTTGGCACTCCGGGGAGGCTCTGGGAACTTATGTCTGGTGGAGAAAAGCATCTTTTGCACATGTTATCTTTTTTTGTACTAGATGAGGCCGATCGTATGATCGAAAATGGGCATTTTCATCAGTTGCAATCCATAATTGACACGCTTCCCAGTACTAATGGCTCTGTTGAAGGAAAATCACAAAGTTTAGATAATGGCGTGACAACCATACAAAGAAAGAAAAGACAAACATTTGTTTTTTCTGCTACCTTATCCCTTTCTTCTGATTTTCGTAAGAAGCTAAAACGTGGATCGGAAAGATCAAAGCAATCAGGCTCTGGTGATTTGAATTCTATTGAAGCCCTTTCAGAGCGAGCTGGAATGAGAGATAATGCCGCTATCATTGACCTGACGAATGCGTCAATTTTAGTGCGTAAGCTTGAAGAATCGTTTATAGAATGCAGGGAAGAAGATAAAGATGCCTATTTGTATTACATTCTGAGCGTTCATGGGCAAGGCCGCACAATAGTTTTTTGTACATCGATTGCTGCCTTGCGACGGGTTGCTGCCCTCTTGAGCATCCTCGGTGTAAATGCTTACACTCTTCATGCTCAGAAGCAGCAAAGATCTCGTTTAAAAGCAATGGATCGTTTTCGTTCCAGTGAAAATGGTACACTTATTGCTACAGATGTTGCAGCAAGAGGCCTTGATATTCCCGGTGTTCGTACTGTTATTCACTACCAACTTCCACATTCGGCCGAAGTTTATGTTCATAGAAGTGGGAGAACTGCTAGAGCTTCAGCTGATGGGTGCAGCATTACACTAATCTCCCCAAATGAAACTTCCAAATTTGCTTCATTGTGCAAATCATTCTCTAAGGAAAGCTTTCGGCAATTCCCTCTTGATCATTCATACATTCCGGGTATTATGAAACGTTTATCGCTTGCCCGCCAGATTGACAAGATCTTGAGAAAGGGCTCTCAGGAGAAAGCCAGGAAAAGCTGGTTGGAAAAAAATGCGGAATCAGTGGAATTTGATGTTGACAAAGGTGACAGTGAGGAAGAAACAGTGAACAATCACAAGCAAAGGAAGGCAGTCTCCATGCAATTAAAGAACTTACAGCAGGAGCTGAATAATCTCCTTTCGCGTCCTCTTCAACCAGAATCTTTTTCGCATCGTTATTTGGCCGGGGCTGGCGTTTCTCCATTACTACAAGACCAATTTGAGGAACTGGCTCGGCAAAAATTTGGTGGCGGGAACACGGGAGACAAGAAAAGAAAGAAACTAATGGTTATTGGTCAGGATTGTGTCGAACCAATCGAAGCGCTCAAAAGCTCCCGTCTTCGGGTAAATCAATCACTTTCTATGATTTTCTGGTGGTCATAG 2409 42.71 MAAEQNSAFSSPMKKCKRKRKRTQMDPEVKRLDSLTWKSSFPASDPFSMFIGSNELEGGFLSLEEIDEAQYGLEVPEIVTGGSKFEKITMITKKQDNGNECEGGDKSRGKVGEKVEREENVETTKKRKKNNNLNKIPEEENLVGRDVDGCSSNETELKFEEKMADENNAEKRKKKKKKKKKMNKGTEKTYENNEFEGKPVDETEFYAWNELRLHPLLMNSIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEQEKAGRIKEGKEEEENDNALRGLRALIITPTRELALQVADHLKAVAEGTNTRVVPIVGGMSTEKQERLLRSRPAIIVGTPGRLWELMSGGEKHLLHMLSFFVLDEADRMIENGHFHQLQSIIDTLPSTNGSVEGKSQSLDNGVTTIQRKKRQTFVFSATLSLSSDFRKKLKRGSERSKQSGSGDLNSIEALSERAGMRDNAAIIDLTNASILVRKLEESFIECREEDKDAYLYYILSVHGQGRTIVFCTSIAALRRVAALLSILGVNAYTLHAQKQQRSRLKAMDRFRSSENGTLIATDVAARGLDIPGVRTVIHYQLPHSAEVYVHRSGRTARASADGCSITLISPNETSKFASLCKSFSKESFRQFPLDHSYIPGIMKRLSLARQIDKILRKGSQEKARKSWLEKNAESVEFDVDKGDSEEETVNNHKQRKAVSMQLKNLQQELNNLLSRPLQPESFSHRYLAGAGVSPLLQDQFEELARQKFGGGNTGDKKRKKLMVIGQDCVEPIEALKSSRLRVNQSLSMIFWWS 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51961320 51966951 + Bma022454.1 Bma05g01262 83346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01262 802 SMART helicmild6 527 608 IPR001650 -
Bma05g01262 802 Coils Coil 266 286 - -
Bma05g01262 802 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 108 756 - -
Bma05g01262 802 Pfam DEAD/DEAH box helicase 230 433 IPR011545 GO:0003676|GO:0005524
Bma05g01262 802 SMART ultradead3 225 452 IPR014001 -
Bma05g01262 802 PANTHER RNA HELICASE 108 756 - -
Bma05g01262 802 CDD SF2_C_DEAD 488 617 - -
Bma05g01262 802 Gene3D - 478 722 IPR027417 -
Bma05g01262 802 Coils Coil 704 724 - -
Bma05g01262 802 MobiDBLite consensus disorder prediction 1 28 - -
Bma05g01262 802 CDD DEADc_DDX24 217 477 - -
Bma05g01262 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 624 IPR027417 -
Bma05g01262 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 398 IPR027417 -
Bma05g01262 802 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Bma05g01262 802 Gene3D - 164 446 IPR027417 -
Bma05g01262 802 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 655 IPR001650 -
Bma05g01262 802 Pfam Helicase conserved C-terminal domain 499 607 IPR001650 -
Bma05g01262 802 MobiDBLite consensus disorder prediction 95 188 - -
Bma05g01262 802 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 206 234 IPR014014 GO:0003724
Bma05g01262 802 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 450 IPR014001 -
Bma05g01262 802 MobiDBLite consensus disorder prediction 95 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01262 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - zju:107422736 982.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01262 Bma-Chr5:51961320 Bma07g00446 Bma-Chr7:5422495 5.08E-64 dispersed
Bma05g01262 Bma-Chr5:51961320 Bma07g01085 Bma-Chr7:43605512 8.71E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01262 Bma_Chr05 FPKM 6.65658 7.226488 12.677816 13.169449 18.132441 14.389474 18.772524 20.267265 18.99733 19.331871