Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01266 ATGGCGGATGTCAGGCTTCATGGAACATGGAGTAGTCCATATAGTGCAAGAGTGAAATGGGCTCTGGCGCTCAAAGGCGTACCTTTTGACTACATAGAAGAAGACCTCGCCAATAAAACCTCTTTGCTCCTCAAGTATAACCCTGTTTACCAGAAGATCCCTGTGCTCGTTCATGGCGGAAAACCAGTCTGCGAGTCCATGATAATACTCGAGTACATCGATGAGACCTGGCCTCAAAATCCTTTGCTTCCGATTGACCCTCACGATAGAGCCGTCGCTCGATTCTGGATCAAATTTGTAGACGAAAAGGTAAATCTGAAATTCAATTCGAATAAATTTGAACTAATTCGCCTAAAAAAAATTTGCATAGTTTGTTGTCTCGCACAGTTACCTAAAATTTGGACGATGTTCACGACCAAAGGCGAAGAACAAGAGATAGCGAAAAAGGAGAGCTTCGAGAGCCTGAAAATCATAGAAGAGCATTGCCTCGCCGGCGGAATGAAGTTCTTCGGTGGAGACAAGATTGGAATGGTGGACTTAGCGATGGGAAGGATTTCAGTATGGCTTCCAGTGTTCGAGAAAGTGCTGGGATTCGAACTCGTTTCAGCTTCTTCATTCCCTAGACTGAAGGCCTGGAGCCTGAACTTCAAAGAGGTGATTGAAATTAAAGAACACCTACCTGATCATGAAGCATTGCTAGGGTATTGCAAGCGTCTCAGGGAGATGAAGATGGCTTCATCGTGA 744 44.89 MADVRLHGTWSSPYSARVKWALALKGVPFDYIEEDLANKTSLLLKYNPVYQKIPVLVHGGKPVCESMIILEYIDETWPQNPLLPIDPHDRAVARFWIKFVDEKVNLKFNSNKFELIRLKKICIVCCLAQLPKIWTMFTTKGEEQEIAKKESFESLKIIEEHCLAGGMKFFGGDKIGMVDLAMGRISVWLPVFEKVLGFELVSASSFPRLKAWSLNFKEVIEIKEHLPDHEALLGYCKRLREMKMASS 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52026871 52027614 + Bma022458.7 Bma05g01266 83350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01266 247 CDD GST_N_Tau 4 77 - -
Bma05g01266 247 SFLD Main (cytGST) 5 213 - -
Bma05g01266 247 SUPERFAMILY Thioredoxin-like 3 103 IPR036249 -
Bma05g01266 247 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 246 IPR010987 -
Bma05g01266 247 PANTHER GLUTATHIONE S-TRANSFERASE 1 241 - -
Bma05g01266 247 SUPERFAMILY GST C-terminal domain-like 75 242 IPR036282 -
Bma05g01266 247 Gene3D Glutaredoxin 1 85 - -
Bma05g01266 247 Pfam Glutathione S-transferase, C-terminal domain 138 214 IPR004046 -
Bma05g01266 247 CDD GST_C_Tau 87 239 IPR045074 GO:0004364|GO:0006749
Bma05g01266 247 Pfam Glutathione S-transferase, N-terminal domain 4 75 IPR004045 -
Bma05g01266 247 SFLD Glutathione Transferase (cytosolic) 5 213 IPR040079 -
Bma05g01266 247 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 241 IPR045073 -
Bma05g01266 247 Gene3D - 86 247 - -
Bma05g01266 247 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01266 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - nnu:104602114 269.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01266 Bma-Chr5:52026871 Bma09g00524 Bma-Chr9:41896855 6.15E-68 dispersed
Bma14g01643 Bma-Chr14:34753479 Bma05g01266 Bma-Chr5:52026871 1.29E-43 dispersed
Bma14g01714 Bma-Chr14:36288882 Bma05g01266 Bma-Chr5:52026871 4.17E-11 dispersed
Bma05g01266 Bma-Chr5:52026871 Bma13g00909 Bma-Chr13:39463942 3.94E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
Vvi15g714 Blo01g00243 . . Bda08g00105 . Bpe05g01032 . Bma05g01266 Cmo08g00133 Cmo17g00522 . . . . . . . . . . . . . . . . . . . . . Cone14ag0017 Cone15ag0019 . . . Csa06g00714 Chy11g01890 . . . . . . . . . Sed08g1875 . . Cma08g00131 Cma17g00544 Car08g00078 . Cpe17g01032 Cpe12g00460 Bhi12g02296 Tan06g1734 Cmetu03g1498 Lac12g0933 . . . Cla06g00111 Cam06g0105 Cec06g0123 Cco06g0122 Clacu06g0124 Cmu06g0121 Cre06g0891 Lsi09g01819 . . Cme11g02426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01266 Bma_Chr05 FPKM 6.363742 6.303897 8.675839 9.346895 8.069294 7.271619 8.542484 15.690629 14.183032 16.102379