Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01283 ATGAGACCGGAGGTAGTTGTTTTGGTTCAAGAGAAGCGAATTACAGAACAAAGCCAAGCCAGCGTTGCTTCGTGTTTTCTCGCCTCTCTCTGCTTTCCATTTCAACTGCTGCACTCTCTCTTCCTTCTCCTCTGTTTTTTTTTTTTTCCACTTTGGCAGAGAGATTGTCGCTGGGAAGGAGGAGTGAAGTTTGTACCAATGGCGGCGTTTGGGAGGCGGTCTGCTTCTTTCTGCTTGGCTGTTTTGTTGACCATGTTTTTCGCTGTGGCAATGAGCGGAGTTCCGACGAACGAGATCTCTGAAAATAGGTCTCTGAAGAAAGTGGAGTTTCAGAGCTCGAGCAACTCATCAATGGCGGCAAAGAAGGAGGAGGAGACAGAGGTTCTTGACAATGAACACGCCGTCGATAATCCAGATGAAATTGCAGCCATGGTTGAACTGAGCATCCACAATAGCACTGAAAGAAGGAACCTGGGTTACTTTTCTTGCGGAAATGGTAACCCAATTGACGATTGCTGGCGTTGCGATCCCAACTGGCACAAAAACCGCAAACGCCTCGCCGACTGTGGAATTGGGTTTGGAAGAAACGCTGTCGGTGGCCGAAACGGCCGATTTTATGTCGTCACTGATTCCCGCGATGACGACCCAGTCAACCCCAAGCCGGGCACTTTGCGATATGCCGTAATCCAGGACAGACCTCTCTGGATTGTGTTTAAGCGAGACATGGTGATTCAGCTGAAACAAGAGTTAATCGTGAATAGCTTCAAAACCATCGATGGCCGTGGCGTCAACGTCCACATCGCAAATGGAGCTTGTATTACCATCCAATACGTCACCAATGTTATCATCCATGGCCTCCACATCCACGATTGCAAGCCCACTGGCAACGCCATGGTGAGAAGCTCGCCCAGCCATTTCGGGTGGAGGACAATGGCCGATGGCGACGCCGTCTCCATTTTCGGGTCGAGCCACATATGGGTTGATCACAACTCGCTCTCTCACTGCGCTGATGGTCTTGTTGACGCTGTGATGGGCTCAACTGCAATTACAATTTCAAACAACCACTTCACCCACCACAATGAGGTGATGCTGTTGGGTCATAGTGATTCGTACACAAAAGATAAGCAAATGCAAGTTACCATTGCTTACAACCATTTTGGAGAAGGACTCATCCAGAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTGGTGAACAATGACTACACCCACTGGGAAATGTACGCTATTGGGGGAAGTGGGAATCCAACCATCAACAGCCAGGGCAACAGATATGCAGCTCCAGCAAACCCCTTTGCAAAAGAGGTGACGAAGAGGGTTGAAACAGCAGAAAGCCAGTGGAAGAACTGGAACTGGAGATCAGAGGGAGACTTGTTGCTTAAACGGAGCATATTTCACTCCGTCTGGCGCCGGAGCTTCTTCAAACTACGCCAAGGCCTCAAGCTTGGGCGCTAA 1476 49.39 MRPEVVVLVQEKRITEQSQASVASCFLASLCFPFQLLHSLFLLLCFFFFPLWQRDCRWEGGVKFVPMAAFGRRSASFCLAVLLTMFFAVAMSGVPTNEISENRSLKKVEFQSSSNSSMAAKKEEETEVLDNEHAVDNPDEIAAMVELSIHNSTERRNLGYFSCGNGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAVGGRNGRFYVVTDSRDDDPVNPKPGTLRYAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYAAPANPFAKEVTKRVETAESQWKNWNWRSEGDLLLKRSIFHSVWRRSFFKLRQGLKLGR 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52172390 52176219 - Bma022473.1 Bma05g01283 83367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01283 491 Gene3D - 166 485 IPR012334 -
Bma05g01283 491 SMART amb_all 241 438 IPR002022 -
Bma05g01283 491 Pfam Pectate lyase 247 430 IPR002022 -
Bma05g01283 491 PRINTS Pollen allergen Amb family signature 457 481 IPR018082 -
Bma05g01283 491 PRINTS Pollen allergen Amb family signature 213 238 IPR018082 -
Bma05g01283 491 PRINTS Pollen allergen Amb family signature 249 265 IPR018082 -
Bma05g01283 491 PRINTS Pollen allergen Amb family signature 415 434 IPR018082 -
Bma05g01283 491 PRINTS Pollen allergen Amb family signature 189 206 IPR018082 -
Bma05g01283 491 PRINTS Pollen allergen Amb family signature 393 412 IPR018082 -
Bma05g01283 491 PRINTS Pollen allergen Amb family signature 313 334 IPR018082 -
Bma05g01283 491 PANTHER PECTATE LYASE 81 473 - -
Bma05g01283 491 PANTHER PECTATE LYASE 18-RELATED 81 473 IPR045032 GO:0030570
Bma05g01283 491 SUPERFAMILY Pectin lyase-like 143 476 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01283 Bma-Chr5:52172390 Bma13g00744 Bma-Chr13:23362741 0 dispersed
Bma04g01050 Bma-Chr4:19126066 Bma05g01283 Bma-Chr5:52172390 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01283 K01728 - jre:109005675 705.671