Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01290 ATGGAATCGAGTTCGAGTTTGAGCAAAAGTGCGCTGGCAGTGAAAGAATCATCTTCAAACTACTACCCATACCCTCCGCCTCTTGCCAAATACGAGGATGTTATAGCCAGCCCGAAGCTTTTCATTTCCAGTTTGGAGAAACTCCATGCTTCTCTTGGAACCAAGTTCATGATCCCCATTATAGGGGGGAAAGAGCTGGACTTGCATCGGCTTTTTGTTGAAGTTACTGCTCGTGGTGGCATTGAGAAGATCATCAGAGAAAGACGATGGAAGGAAGTCACGGCCGTTTTCAACTTCCCGTCGACGGCTACCAACGCTTCTTTTGTGCTGAGAAAGTATTACGTTTCGCTGCTTCACCACTTCGAACAAATTTACTTCTTCAAAGCTCAAGGCTATTCCCATGGCTTTGCTGATTCATTGCAGAGCCCTCAGGGAACGCCGTTTTTACATCGGTCGGCCGATAATCAAGAAGCCATGATCCATCAATCGAAATCTAACCCTTCGCCACTTCCTTCTGACGGCCGAAATGTTGGGTCGTGGAGTGGAAATTCGGTCGTCGGAGTAATTGACGGGAAATTCGAAAGTGGGTATCTTGTGACAGTTACGATAGGTTCGGAGACGTTAAAAGGGGTTCTTTACCAAACGTCGTTAAACCAGTCGGAAACAGTTTCACTCGGTATGTTTTCCGGCGGTCAAGACATTACTCCAGCATTGCCAGTCGTCCAACGCCGCCGGCGCCGGAGAAAGAAGTCGGAAATAAGACGGCGCGACCCTGCTCATCCGAAGCCGAACAGAAGCGGCTACAACTTTTTCTTCGCCGAGCAGCATGCTAGGCTCAAACCACTCTACCCTGGAAGAGATAGAGAGATCAGCAGAATGATTGGCGAACTGTGGAACAAACTGAACGAATCCGAAAGAACAGTTTATCAGGATAAAGCCATGAAAGATAAAGAACGATACAGAGCTGAAATGGAGGAATACAGAGAGAGGCTGAGAACAGGTCAGGTAATAAGAGATGCATGTTCCATTACAACAGCGTCTTCCTCAGCCTGTAAACATGGAAGTAGAAGCTGA 1074 47.49 MESSSSLSKSALAVKESSSNYYPYPPPLAKYEDVIASPKLFISSLEKLHASLGTKFMIPIIGGKELDLHRLFVEVTARGGIEKIIRERRWKEVTAVFNFPSTATNASFVLRKYYVSLLHHFEQIYFFKAQGYSHGFADSLQSPQGTPFLHRSADNQEAMIHQSKSNPSPLPSDGRNVGSWSGNSVVGVIDGKFESGYLVTVTIGSETLKGVLYQTSLNQSETVSLGMFSGGQDITPALPVVQRRRRRRKKSEIRRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGRDREISRMIGELWNKLNESERTVYQDKAMKDKERYRAEMEEYRERLRTGQVIRDACSITTASSSACKHGSRS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52272695 52274185 + Bma022480.1 Bma05g01290 83374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01290 357 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Bma05g01290 357 SMART bright_3 36 127 IPR001606 GO:0003677
Bma05g01290 357 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 344 - -
Bma05g01290 357 Gene3D - 29 134 IPR036431 GO:0003677
Bma05g01290 357 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 4 344 - -
Bma05g01290 357 Coils Coil 310 330 - -
Bma05g01290 357 SUPERFAMILY HMG-box 249 333 IPR036910 -
Bma05g01290 357 SMART ARID_2 32 122 - -
Bma05g01290 357 MobiDBLite consensus disorder prediction 242 267 - -
Bma05g01290 357 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Bma05g01290 357 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Bma05g01290 357 SUPERFAMILY ARID-like 33 131 IPR036431 GO:0003677
Bma05g01290 357 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Bma05g01290 357 CDD HMGB-UBF_HMG-box 261 325 - -
Bma05g01290 357 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Bma05g01290 357 Gene3D High mobility group box domain 245 341 IPR036910 -
Bma05g01290 357 SMART hmgende2 260 329 IPR009071 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01053 Bma05g01290 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01290 Bma-Chr5:52272695 Bma05g00859 Bma-Chr5:46131362 1.41E-06 dispersed
Bma01g02389 Bma-Chr1:81465823 Bma05g01290 Bma-Chr5:52272695 1.54E-74 transposed
Bma04g01054 Bma-Chr4:19678935 Bma05g01290 Bma-Chr5:52272695 1.74E-14 transposed
Bma13g01143 Bma-Chr13:44620708 Bma05g01290 Bma-Chr5:52272695 5.05E-91 transposed
Bma14g01541 Bma-Chr14:31171398 Bma05g01290 Bma-Chr5:52272695 1.88E-06 transposed
Bma04g01053 Bma-Chr4:19598462 Bma05g01290 Bma-Chr5:52272695 2.44E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57391 PF01388 ARID 1.30E-17 CL0123 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01290 - - tcc:18602725 431.795