Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01299 ATGGATCCTGTCAACGATTGGGGAAACACCCCTCTTCACACCGTCGACCCTGAAATCTTCGATCTCATCGAGAAGGAGAAGCGCCGACAATGCCGGGGTATCGAGCTCATCGCCTCCGAGAATTTCACCTCCTTCGCCGTCATTCAGGCTCTCGGAAGTGCTCTCACCAACAAATACTCCGAGGGAATGCCCGGTAACCGTTACTACGGGGGTAACGAGTTCATCGACGAGATTGAGAATCTCTGTCGCTCTCGGGCTCTCCAGGTTTTTCACCTCGATCCTATCAAATGGGGCGTCAATGTCCAACCCTACTCCGGTTCCCCTGCGAATTTCGCTGCCTACACGGCTGTCCTTCAGCCTCACGACCGTATTATGGGCCTCGATCTTCCATCCGGGGGCCACCTGACTCACGGCTACTACACCTCCGCTGGGAAGAAGATCTCGGCTACTTCCATCTATTTTGAGAGTTTGCCTTACAAGGTTAATTCCACCACGGGATATATTGATTATGATAGATTGGAGGAGAAGGCTCTGGACTTCAGGCCTCGATTGATCATCTGCGGTGGCAGTGCGTACCCAAGGGACTGGGATTATGCCAGATTTAAGGCAATTGCGGATAAGTGCGGTGCGCTTTTGCTTTGTGATATGGCTCACATTAGCGGTCTCGTTGCTGCTCAGGAAGCTGCGAACCCCTTCGAGTACTGCGACATTGTCACCACAACCACCCATAAAAGCTTGAGGGGTCCAAGGGCTGGTATGATCTTTTACAGGAAGGGTCCCAAACCAGCAAAGAAAGGTCAGTCAGAAGATGCAGTTTATGATTTTGAAGACAAAATCAACTTTGCAGTTTTCCCCTCACTCCAGGGTGGTCCCCACAATCACCAAATTGGGGCCCTTGCTGTTGCTTTGAAGCAAGCAATGTCACCCGGATTCAAGACCTATGCCAAGCAAGTGAAGGCCAATGCTGTAGCCTTAGGAAACTTCTTGCTGAGCAAGGGTTATAAACTTGTTACTGGAGGAACTGAAAATCACCTTGTTCTTTGGGATCTTCGTCCTTTGGGCTTAACAGACAATGAAGGTTATGGGTCTAACATTGGGTTTGCATTTTTTATGCTTTTTACAGGAAACAAGGTTGAGAAACTTTGTGATTTGTGCAACATTACTGTGAACAAGAATGCTGTGTTCGGTGATAGCAGTGCCTTGGCTCCTGGAGGAGTTAGAATTGTCTTTGTATATAATCTATTAAATTTCACATCACCAATTTCCAATATTGGGCTAATTATGAGCTGGGAGTGTCCCCCTTGGCATCTATTACTGAGGAGATTGGAATTTGTAGGTACACCTGCAATGACTTCGAGAGGACTGGTGGAGAAAGACTTTGAGCAAATAGGAGAGTTCCTTAACCGAGCTGTGACAATCACCTTGACCATCCAAAAGGAGCATGGAAAGCTATTGAAGGACTTCAACAAGGGCCTGACAAACAACAAGGACATCGAGAATCTCAAGGTTGATGTGGAGAAGTTCTCTTCCTCCTTTGACATGCCCGGATTCCTCACGTCAGAGATGAAGTTCAAGGATTAG 1581 47.82 MDPVNDWGNTPLHTVDPEIFDLIEKEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQVFHLDPIKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSAGKKISATSIYFESLPYKVNSTTGYIDYDRLEEKALDFRPRLIICGGSAYPRDWDYARFKAIADKCGALLLCDMAHISGLVAAQEAANPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPAKKGQSEDAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKTYAKQVKANAVALGNFLLSKGYKLVTGGTENHLVLWDLRPLGLTDNEGYGSNIGFAFFMLFTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIVFVYNLLNFTSPISNIGLIMSWECPPWHLLLRRLEFVGTPAMTSRGLVEKDFEQIGEFLNRAVTITLTIQKEHGKLLKDFNKGLTNNKDIENLKVDVEKFSSSFDMPGFLTSEMKFKD 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52312388 52315169 - Bma022488.2 Bma05g01299 83383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01299 526 CDD SHMT 15 474 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma05g01299 526 SUPERFAMILY PLP-dependent transferases 445 518 IPR015424 -
Bma05g01299 526 Gene3D - 41 316 IPR015421 GO:0003824
Bma05g01299 526 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Bma05g01299 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 445 525 - -
Bma05g01299 526 PIRSF SHMT 1 361 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma05g01299 526 PIRSF SHMT 444 521 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma05g01299 526 PIRSF SHMT 369 410 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma05g01299 526 Gene3D Aspartate Aminotransferase, domain 1 444 514 IPR015422 GO:0003824
Bma05g01299 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 373 408 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma05g01299 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 359 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma05g01299 526 Hamap Serine hydroxymethyltransferase [glyA]. 11 516 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma05g01299 526 Gene3D Aspartate Aminotransferase, domain 1 16 408 IPR015422 GO:0003824
Bma05g01299 526 Pfam Serine hydroxymethyltransferase 13 408 IPR039429 -
Bma05g01299 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 373 408 - -
Bma05g01299 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 359 - -
Bma05g01299 526 SUPERFAMILY PLP-dependent transferases 7 408 IPR015424 -
Bma05g01299 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 445 525 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01299 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - jre:109011697 884.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01367 Bma-Chr1:20645218 Bma05g01299 Bma-Chr5:52312388 5.37E-179 transposed
Bma01g02633 Bma-Chr1:83873129 Bma05g01299 Bma-Chr5:52312388 0 transposed
Bma10g00629 Bma-Chr10:8672419 Bma05g01299 Bma-Chr5:52312388 1.78E-180 transposed
Bma12g00018 Bma-Chr12:713070 Bma05g01299 Bma-Chr5:52312388 0 transposed
Bma04g01162 Bma-Chr4:29997856 Bma05g01299 Bma-Chr5:52312388 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g913 Blo01g00337 Blo12g00102 Bda03g01142 Bda08g00042 Bpe04g01084 . . Bma05g01299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00570 . . . . . . . . . . . . . . . Car17g00083 . . . . . . . . . . . . . . . . . . . Cme05g00731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01299 Bma_Chr05 FPKM 29.410919 29.832455 38.572632 35.779732 21.889435 19.219872 26.285997 28.518669 31.613024 35.856251