Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01323 TCAACAATGACTGTGACGCCGAGGATCTCCATCAACGACGGGAACCTGGTGGTTCACGGAAAGACCATATTGACTGGAATCCCAGACAACATTGTGTTGACACCAGCATCCGGTCTGGGACTCGTCGCTGGTGCATTTATTGGTGCTACGGCTTCCCATACCAAAAGCCTTCATGTCTTTCCCGTGGGTGTCCTTGAGGACCTTCGATTCATGTGTTGTTTCCGATTTAAATTATGGTGGATGACTCAGAGGATGGGAAATTGTGGAAAAGAAATTCCATTGGAGACCCAATTTCTGCTCGTGGAGAGCAAAGACAACAATGAAGGAGGAAATCATGATGTCTCCCCAACAATATACACTATTTTCCTTCCTTTACTTGAAGGCCAATTCCGTGCTGTCCTTCAAGGGAATGACAAAAATGAGGTCGAGATCTGCCTGGAGAGCGGCGATAATTCTATTGAGACGAATCAAGGTCTTAACCTAGTTTACGTGCACGCTGGGACAAATCCGTTTGAAGTTACTAGTCAAGCTGTAAAGGCTGTAGAAAAGCACACCCAAGCTTTTCATCATCGCGAGAGGAAAAAGTTGCCTTCTTTCCTTGACTGGTTTGGTTGGTGCACATGGGATGCGTTTTACACTGATGTCACAGCTGAAGGAATTGAAGAAGGCCTCAAAAGCTTGTCAGAAGGAGGAACTCCTCCTAGATTCTTAATCATAGATGATGGTTGGCAACAGATAGAGAGCAAAGGAAAGGATGCTGATTGCGAGGTTCAAGAAGGAGCACAATTTGCTAGTAGATTGACAGGAATAAAAGAGAACGGAAAATTCCAAAAGAATGGACAGAATGACGGACATGTCTCTGGACTGAAGCATGTTGTGGATGGAGCCAAGCAACATTACAATGTGAAGAATGTGTATGTGTGGCATGCTCTAGCGGGATATTGGGGTGGAGTAAAGCCATTAGCTGCAGGCATGGAACATTACGACTCTGCTTTGGCATATCCGGTTCAGTCCCCCGGTGTTCTGGGTAATCAACCGGACATTGTCATGGATAGTCTAGCTGTTCATGGCCTGGGTCTTGTGCATCCAAAGAAAATATTCAACTTCTACAATGAACTTCATTCCTACTTAGCTTCATGTGGAGTAGATGGAGTAAAAGTTGATGTGCAGAACATTATCGAAACCCTTGGGGTTGGTCATGGTGGCAGAGTATCTCTGACTCGCAGCTACCATCAGGCACTCGAAGCCTCGATTTCTCGTAACTTTCCTGACAATGGATGTATTGCCTGCATGTGTCACAACACCGATGGACTCTACAGTGCTAAACAGACGGCTGTGGTCAGGGCTTCGGATGACTTCTATCCTCGGGATCCCACGTCGCACACCATTCATATTTCATCTGTGGCGTTCAATACTCTCTTTCTTGGAGAATTCATGCAACCCGACTGGGATATGTTTCAGAGCCTACATCCTGCTGCTGAGTATCACGGTGCAGCTCGAGCAATTGGTGGATGCGCAATCTATGTCAGTGACAAGCCAGGAAACCACAACTTTGAACTATTAAAGAAGCTGGTTCTCCCTGATGGATCTGTTCTCCGTGCTCAACTGCCTGGAAGACCAACTCGTGATTCACTATTCTCTGATCCTGCTAGAGATGGAACAAGCTTGCTCAAAATTTGGAATATGAACAAGTGCTCTGGTGTGGTTGGGGTGTTCAACTGCCAAGGCGCTGGTTGGTGTAAGATCACCAAGAAGACCCGCATTCACGATGAATCTCCCGGTACTCTTACCTGTTCTGTCTATGCTAACGATGTCGAGAACATTGCTCAAATTGCCGGTCCAGATTGGAACGGGGAGACTGCAGTCTATGCCTACAAATCCAGAGAGTTGATCCGGCTACCAAAAGTAGTTTCTTTGCCTGTTACACTCAAGGTCCTTGAATACGAACTTTTCCATTTCTGTCCAATCAGAGAAATCACCTCCTACATTTCAATTGCACCAATAGGTCTACTTGACATGTTCAATGCCGGTGGTGCTGTGGATCAAGTCGAGATCAACCCCATATCAGAATCTGACCAGCGACCCGAGCTCTTCGACGGTGAAATTCAATCTGAGCTGACCACTTCACTGAGCAAAAACCGATCCCCGACTGCAACAATCACCTTCAAAGTCAGAGGCTGCGGCCGATTTGGCGCATACTCGTCTCAAATTCCGCTCAAGTGCAAGGTTGACAATACCGCCACCGACTTCGACTATGATGCCACAACTGGACTCACTACATTTACCAGTTGGCTTGATCTCTTCGATTTCTTCTTAGTTTTGTGCTGGATGTCTTTTTTTTTTTTTTCCCTCCTTCAGGCAAAAGCATCAAAGCAGATCGTCGGACGTCAAGTTTGCCAAATCTGCAGCGACTCTGTTGGAAAAACTGTTGATGGGGAGCCGTTTGTTGCGTGCAATGTTTGTAATTTTCCTGTTTGTAGACCCTGCTATGAGTATGAAAGAAAGGATGGAAATAAGTCCTGTCCTCAATGCAAGACTAAATACAAGTGGCTTAAAGGAAGCCCTCTGGTTAATGGGGAAGAAGGAGATGATTCTGATGTTAATGGAGGGGCGAATGCTCCCAATTACAATTCTAGTGAAGGAGATATGAAGTATAAGCTACCTGAACGTACGCTTAGTTGGGATACAAACTATGATAAGGAAGAATCCTTCAATCATATTCCATTGCTCACCACTGGACGCTCTGTTTCTGGAGACCTATCAGCTGCATCCCCTGAACGCCTTTCAATGGCGTCTCCAGAAAGCTTGAGCAGGATGTATGTCATCCCCTTATCATGTCACTTTCATTTCGGTAGAATTATCTTTCTGGGTCTTTTTAAATTGGAGTTTACTTTTCTTTTCTTCTTTCTTTTGGCTAAATATTGGAAATATTTGTTGATATTGGCAGCTAATTATAGAATAGTGGACCCTTCGAGAGAGGCTGGGTCGAATGGACTTGGCGGTGTTGCCTGGAAAGAGAGAATTGATGGTTGGAAGATGAAGCAGGAGAAGAGTCATGCTCCAATGAGTAGCCATGCTCCCTCTGAAGGTAGAGGAGGCGCAGACTTTGATGCTAGTACTGATATTGTTATGGATGATTCTTTGCTAAATGATGAAGCGCGCCAGCCTTTATCAAGGAAGGTTTCGGTTCCATCCTCCAGGATCAATCCTTACAGGATGGTTATAGTTCTACGTCTTGTTATTCTTTCCATCTTCCTCCATTACCGTTTGACAAACCCGGTTCCCAATGCATTTACTTTGTGGTTAATATCTGTCATTTGTGAGATATGGTTTGCATTTTCATGGATTTTGGATCAATTCCCCAAGTGGCTCCCTGTGAACCGTGAGACGTATCTTGATAGGCTAGCACTGAGATATGATAGAGAAGGAGAGCCTTCTCAGTTGGCGGCTGTAGACATTTTTGTGAGTACGGTTGACCCTCTAAAGGAACCTCCTCTTGTCACGGCCAACACTGTTTTGTCTATTCTGGCAGTGGATTACCCAGTCGACAAAGTTTCTTGCTATGTCTCAGACGATGGAGCTGCTATGTTGACATTTGAAGCTTTGTCTGAAACATCTGAATTTGCGAGAATATGGGTTCCTTTCTGCAAAAAATATAGCATTGAGCCAAGAGCTCCAGAGTGGTATTTTTCAAAGAAGATTGACTATTTGAAAGATAAGGTTCAACCATCATTTGCCAAAGATCGAAGGGCGATGAAGAGAGAGTACGAAGAGTTTAAAATAAGAATCAATGTACTTGTTGCAAAGGCGCAAAAGATTCCTGATGAAGGGTGGATCATGCAAGATGGAACCCCTTGGCCTGGAAATAACACCAGAGACCATCCAGGAATGATCCAGGTTTTCCTAGGACATAGTGGAGGTCTCGACAGTGAGGGTAATGAGCTACCCCGTCTAGTTTATGTATCTCGTGAGAAGCGGCCTGGATTTCAGCACCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGTGTGTCGGCTGTGCTTACAAATGGACCCTTCTTATTAAATCTCGATTGTGATCATTACATAAACAACAGCAAGGCATTGAGGGAAGCTATGTGTTTTCTAATGGATCCAAATCTTGGCAAGTCTGTTTGTTATGTTCAATTTCCTCAGAGATTTGATGGAATTGATAAAAACGATCGATATGCAAATCGAAACACAGTGTTCTTTGATATCAATTTAAGGGGCTTGGACGGCATCCAAGGTCCAGTTTACGTCGGAACGGGATGTGTTTTCAATCGAACTGCCTTGTATGGTTACGAGCCACCTGTCAAGTCTAAGCATAAGAAACGAGGACTATTCTCTTTTGGTGGGAAAAAGAGTTCGAAATCAAGTAGGAAGGGCTCTGACGGTAAAAAATCTAGCAAGCATGCTGACCCCACCGTCCCAATATTTAACCTAGAGGATATTGAGGAAGGAGTTGAAGGTTCTGGGTTTGATGATGAGAAGTCACTGCTCATGTCACAGATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCCGTTTTTGTTGCTTCGACATTGATGGAGAATGGTGGGGTTCCACAGTCAGCCATTGCTGAATCCCTCCTCAAAGAAGCTATTCACGTCATTAGTTGTGGATATGAAGACAAGACAGAGTGGGGAACTGAGATAGGATGGATCTATGGCTCTGTTACAGAGGATATTCTTACGGGTTTTAAGATGCATGCTCGTGGATGGAGATCGATCTACTGCGTGCCAAAGCTTGCAGCATTTAAAGGATCAGCTCCGATAAATCTTTCCGACCGTCTAAATCAAGTGCTGCGATGGGCTTTAGGTTCAGTTGAAATTCTTTTCAGTCGTCACTGTCCTATATGGTATGGCTATGGAGGAAGGCTCAAATGGCTTGAGAGATTTGCTTACATTAATACCACCATTTACCCATTAACATCCATCCCTCTTCTTGCCTACTGCACATTGCCGGCCATATGTCTGCTCACTGGCCAGTTCATCATTCCACAGATTAGTAACATTGCCAGTATCTGGTTCATATCTCTCTTTCTTTCCATCTTCGCCACCGGAATATTGGAAATGAGATGGAGTGGCGTTGGTATCGACGAATGGTGGAGAAACGAACAATTCTGGGTTATTGGTGGTGTGTCGGCCCATCTCTTCGCCGTTTTCCAAGGCCTGCTCAAAGTCCTTGCCGGAATCGACACAAATTTCACTGTCACCTCCAAAGCTTCCGATGAGGATGGCGATTTTGCAGAGCTCTACTTGTTCAAATGGACAACTCTCCTCATCCCTCCGACAACTCTCCTCATCATCAACTTAGTCGGAGTAGTTGCGGGAGTCTCTTACGCCGTTAACAGTGGCTACCAACAAAGTTTCAAGCTTCCTTACGTTTCTACCGGAAAAGGTGGCTCGAAGACCGGGAGTTTCAAGTTCAAAGCCACTTCGGCTCAAACAAAGATAACATTTTTCAGTCCATACTATCACACAAAGCGCAAAGACTTCGGCCATTTGTGTGGCCCTGTTTTGGATAATATTGTGGTTTTTCCATTGCCTTAG 5592 44.87 STMTVTPRISINDGNLVVHGKTILTGIPDNIVLTPASGLGLVAGAFIGATASHTKSLHVFPVGVLEDLRFMCCFRFKLWWMTQRMGNCGKEIPLETQFLLVESKDNNEGGNHDVSPTIYTIFLPLLEGQFRAVLQGNDKNEVEICLESGDNSIETNQGLNLVYVHAGTNPFEVTSQAVKAVEKHTQAFHHRERKKLPSFLDWFGWCTWDAFYTDVTAEGIEEGLKSLSEGGTPPRFLIIDDGWQQIESKGKDADCEVQEGAQFASRLTGIKENGKFQKNGQNDGHVSGLKHVVDGAKQHYNVKNVYVWHALAGYWGGVKPLAAGMEHYDSALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKIFNFYNELHSYLASCGVDGVKVDVQNIIETLGVGHGGRVSLTRSYHQALEASISRNFPDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPTSHTIHISSVAFNTLFLGEFMQPDWDMFQSLHPAAEYHGAARAIGGCAIYVSDKPGNHNFELLKKLVLPDGSVLRAQLPGRPTRDSLFSDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTCSVYANDVENIAQIAGPDWNGETAVYAYKSRELIRLPKVVSLPVTLKVLEYELFHFCPIREITSYISIAPIGLLDMFNAGGAVDQVEINPISESDQRPELFDGEIQSELTTSLSKNRSPTATITFKVRGCGRFGAYSSQIPLKCKVDNTATDFDYDATTGLTTFTSWLDLFDFFLVLCWMSFFFFSLLQAKASKQIVGRQVCQICSDSVGKTVDGEPFVACNVCNFPVCRPCYEYERKDGNKSCPQCKTKYKWLKGSPLVNGEEGDDSDVNGGANAPNYNSSEGDMKYKLPERTLSWDTNYDKEESFNHIPLLTTGRSVSGDLSAASPERLSMASPESLSRMYVIPLSCHFHFGRIIFLGLFKLEFTFLFFFLLAKYWKYLLILAANYRIVDPSREAGSNGLGGVAWKERIDGWKMKQEKSHAPMSSHAPSEGRGGADFDASTDIVMDDSLLNDEARQPLSRKVSVPSSRINPYRMVIVLRLVILSIFLHYRLTNPVPNAFTLWLISVICEIWFAFSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARIWVPFCKKYSIEPRAPEWYFSKKIDYLKDKVQPSFAKDRRAMKREYEEFKIRINVLVAKAQKIPDEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPVKSKHKKRGLFSFGGKKSSKSSRKGSDGKKSSKHADPTVPIFNLEDIEEGVEGSGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAIAESLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCVPKLAAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYINTTIYPLTSIPLLAYCTLPAICLLTGQFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIINLVGVVAGVSYAVNSGYQQSFKLPYVSTGKGGSKTGSFKFKATSAQTKITFFSPYYHTKRKDFGHLCGPVLDNIVVFPLP 1863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52786012 52802020 + Bma022514.1 Bma05g01323 83407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01323 1863 Pfam Cellulose synthase 1151 1804 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bma05g01323 1863 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1165 1671 IPR029044 -
Bma05g01323 1863 MobiDBLite consensus disorder prediction 1464 1478 - -
Bma05g01323 1863 MobiDBLite consensus disorder prediction 1446 1481 - -
Bma05g01323 1863 Gene3D Aldolase class I 201 512 IPR013785 -
Bma05g01323 1863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 873 IPR013083 -
Bma05g01323 1863 CDD mRING-HC-C4C4_CesA_plant 797 847 - -
Bma05g01323 1863 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1268 1442 IPR029044 -
Bma05g01323 1863 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 790 1802 - -
Bma05g01323 1863 ProSiteProfiles Zinc finger RING-type profile. 799 845 IPR001841 -
Bma05g01323 1863 PANTHER CELLULOSE SYNTHASE 790 1802 - -
Bma05g01323 1863 Pfam Raffinose synthase or seed imbibition protein Sip1 9 761 IPR008811 -
Bma05g01323 1863 SUPERFAMILY (Trans)glycosidases 199 529 IPR017853 -
Bma05g01323 1863 SUPERFAMILY RING/U-box 793 865 - -
Bma05g01323 1863 Pfam Zinc-binding RING-finger 794 865 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02157 Bma-Chr1:78243339 Bma05g01323 Bma-Chr5:52786012 8.66E-12 dispersed
Bma04g00063 Bma-Chr4:561763 Bma05g01323 Bma-Chr5:52786012 0 dispersed
Bma05g01323 Bma-Chr5:52786012 Bma06g00533 Bma-Chr6:27321590 8.71E-24 dispersed
Bma15g00485 Bma-Chr15:5654506 Bma05g01323 Bma-Chr5:52786012 1.92E-54 dispersed
Bma05g01323 Bma-Chr5:52786012 Bma06g00955 Bma-Chr6:45847014 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01323 K10999 - csv:101211779 1734.92