Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01330 AACAAACCCAAGGAAGAGATTTGCGATATTGATTCAGCTGATGCAGGAAATGAGTTGGCAGAAGTAGAATATATTGATGATATGTACAAGTTCTACAAGCTTGTTGAGCATGAAACCAGGCCTCGTGATTATATGGATTTACAGCCTGAGATAAATGTTCAAATGAGATCTATTCTGGTGGATTGGCTGGTTGATGTTCATAACAGATTCGAACTTTGCCCTGAAACATTCTACCTCGCAATCAACATAATCGACCGATTTCTGGCAGCCAAGAAGGTGATGAGAAAAGAACTGCAGTTGGTGGGTATAAGTGCAATGCTGATAGCCACAAAATACGAAGAAATCTTCCCTCCTTTGGTTGAAGACTTTGTCTGTCTTACAGACGGAGCTTACACCCCCGATCAAATCTTGAAGATGGAGAAAACAATTCTGGGAGAGCTCGAATGGACATTGACAGTGCCTACGCCATACGTGTTTCTTGTTCGGTTCATCAAGGCCTCTAAAGATGTGGATTTAGAAATGGAGAATATGGTTTACTTTTTAGCTGAACTGGGAATGATGCATTATGCGGCTGTGATAATGTACTCCCCATCGATGATTGCTGCCTCGGCAGTCTACGTTGCTCGATGTACTCTGAACAAGAACACTGCCTGGAATGAAACTCTGAAGTTCCATTCTGGCTTTTCGGAATCACAGCTCGTTGATTGTGCGAAATTGTTGGTGGGCTTCCACGAAATGACGAGTCAGAGCCGGCTGCAGGTTGTGCTCAAGAAATACTCAAAGTCGGAGAGAGGTGGTGTGGCTCTGCTTCAGCCGGCCAAGAAATTGGGGCTGGCTGGGCCTGCCTAG 849 44.76 NKPKEEICDIDSADAGNELAEVEYIDDMYKFYKLVEHETRPRDYMDLQPEINVQMRSILVDWLVDVHNRFELCPETFYLAINIIDRFLAAKKVMRKELQLVGISAMLIATKYEEIFPPLVEDFVCLTDGAYTPDQILKMEKTILGELEWTLTVPTPYVFLVRFIKASKDVDLEMENMVYFLAELGMMHYAAVIMYSPSMIAASAVYVARCTLNKNTAWNETLKFHSGFSESQLVDCAKLLVGFHEMTSQSRLQVVLKKYSKSERGGVALLQPAKKLGLAGPA 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52864423 52865622 + Bma022521.1 Bma05g01330 83414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01330 282 PIRSF Cyclin_A_B_D_E 1 281 IPR039361 -
Bma05g01330 282 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 4 278 - -
Bma05g01330 282 SMART Cyclin_C_2 154 273 IPR004367 -
Bma05g01330 282 SUPERFAMILY Cyclin-like 17 151 IPR036915 -
Bma05g01330 282 SMART cyclin_7 61 145 IPR013763 -
Bma05g01330 282 SMART cyclin_7 158 242 IPR013763 -
Bma05g01330 282 Gene3D - 41 152 - -
Bma05g01330 282 SUPERFAMILY Cyclin-like 153 274 IPR036915 -
Bma05g01330 282 Gene3D - 27 268 - -
Bma05g01330 282 CDD CYCLIN 152 241 IPR013763 -
Bma05g01330 282 Pfam Cyclin, C-terminal domain 154 272 IPR004367 -
Bma05g01330 282 Pfam Cyclin, N-terminal domain 27 151 IPR006671 -
Bma05g01330 282 PANTHER CYCLINS 4 278 IPR039361 -
Bma05g01330 282 ProSitePatterns Cyclins signature. 56 87 IPR006671 -
Bma05g01330 282 CDD CYCLIN 55 144 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01330 Bma-Chr5:52864423 Bma07g00293 Bma-Chr7:3670622 6.19E-113 dispersed
Bma15g00922 Bma-Chr15:33222594 Bma05g01330 Bma-Chr5:52864423 2.80E-07 dispersed
Bma01g02702 Bma-Chr1:84443833 Bma05g01330 Bma-Chr5:52864423 5.51E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01330 K21777 - csv:101217210 408.683