Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g01331 | ATGAGGGAGGACGACTCTAATTGGTTCTCAAGGTGGGAGGAGGAGCTCCCATCTCCTGACGAATTGATGCCTCTGTCACAAACCCTAATCACTCCTGATCTTGCTCTCGCTTTTAAAATCCAAAATCCCTCCAACTCTCCCCCCCAACGAGGCGCTCTTCCTCCTCCCAGTCAATTAGCTTCCTCCGCTGCTGCTGGCGGCTGTAGTGGAGCCACCACCCAACCCAACTCATCTGAGTTTGCGGATTCTGCCGATTTGGGTTCTGGAGCCGCCGGTGACGAACCGGCAAGAACTCTCAAGCGGCCGCGGCTGGTTTGGACGCCCCAGCTCCACAAGCGATTCGTAGACGCGGTGGCGCATTTGGGGATCAAGAATGCCGTGCCAAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGGGAGAACGTGGCTAGCCATTTGCAGAAGTACCGGCTATATCTGAAACGGATGCAGGGATTATCCAGCGGGAGCGGCGGAGGAGCCGCTGTAGTGGGCGCTGGAGGCGTTGACCCTGCTACAGATCATTTGTTTGCAAGCTCTCCTGTGCCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCCGATCATTTTTTGCCTTTTGTGCCGGTGACATCTCTGCAGCAACACCACCATCACCAGCAGCAGATTGTGGCGGCGGCAGCAGCAGCTGCTGTCCATCCTCAGCTGCAGCCTCAGTATCACCGACAGGTCGGCCATTTTGGGTCAACTCCGAGTGGGCAATTCGAGCATCCGTTTTCAACGAGGCAAACACAGCCAGTTCACAGGGTGGGTACACCATTGCATAATTCAATGATGAATCACGTTGAGGACTTGGAATCGGCTAATGCCACGGGAGGAAGGAAGGTTATTGCTCTATTTCCAACTGGGGATGATTAA | 930 | 54.41 | MREDDSNWFSRWEEELPSPDELMPLSQTLITPDLALAFKIQNPSNSPPQRGALPPPSQLASSAAAGGCSGATTQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSGGGAAVVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTSLQQHHHHQQQIVAAAAAAAVHPQLQPQYHRQVGHFGSTPSGQFEHPFSTRQTQPVHRVGTPLHNSMMNHVEDLESANATGGRKVIALFPTGDD | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 52866826 | 52867755 | + | Bma022522.1 | Bma05g01331 | 83415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g01331 | 309 | MobiDBLite | consensus disorder prediction | 62 | 83 | - | - | |
Bma05g01331 | 309 | Gene3D | - | 98 | 160 | - | - | |
Bma05g01331 | 309 | MobiDBLite | consensus disorder prediction | 39 | 95 | - | - | |
Bma05g01331 | 309 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 102 | 154 | IPR006447 | GO:0003677 | |
Bma05g01331 | 309 | Pfam | Myb-like DNA-binding domain | 105 | 153 | IPR001005 | - | |
Bma05g01331 | 309 | SUPERFAMILY | Homeodomain-like | 98 | 158 | IPR009057 | - | |
Bma05g01331 | 309 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 106 | 157 | IPR017930 | - | |
Bma05g01331 | 309 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 309 | IPR044841 | GO:0003700|GO:0006355 | |
Bma05g01331 | 309 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Bma05g01331 | 309 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Bma05g01331 | 309 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 309 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g01331 | Bma-Chr5:52866826 | Bma07g00742 | Bma-Chr7:20021750 | 1.34E-23 | dispersed | |
Bma14g01699 | Bma-Chr14:36135175 | Bma05g01331 | Bma-Chr5:52866826 | 1.04E-14 | dispersed | |
Bma07g00088 | Bma-Chr7:1669228 | Bma05g01331 | Bma-Chr5:52866826 | 4.31E-43 | transposed | |
Bma01g02700 | Bma-Chr1:84437522 | Bma05g01331 | Bma-Chr5:52866826 | 4.19E-177 | wgd | |
Bma04g01144 | Bma-Chr4:28858431 | Bma05g01331 | Bma-Chr5:52866826 | 1.29E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57396 | PF00249 | Myb_DNA-binding | 2.30E-08 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g01331 | - | - | csv:101216969 | 411.764 |