Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01331 ATGAGGGAGGACGACTCTAATTGGTTCTCAAGGTGGGAGGAGGAGCTCCCATCTCCTGACGAATTGATGCCTCTGTCACAAACCCTAATCACTCCTGATCTTGCTCTCGCTTTTAAAATCCAAAATCCCTCCAACTCTCCCCCCCAACGAGGCGCTCTTCCTCCTCCCAGTCAATTAGCTTCCTCCGCTGCTGCTGGCGGCTGTAGTGGAGCCACCACCCAACCCAACTCATCTGAGTTTGCGGATTCTGCCGATTTGGGTTCTGGAGCCGCCGGTGACGAACCGGCAAGAACTCTCAAGCGGCCGCGGCTGGTTTGGACGCCCCAGCTCCACAAGCGATTCGTAGACGCGGTGGCGCATTTGGGGATCAAGAATGCCGTGCCAAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGGGAGAACGTGGCTAGCCATTTGCAGAAGTACCGGCTATATCTGAAACGGATGCAGGGATTATCCAGCGGGAGCGGCGGAGGAGCCGCTGTAGTGGGCGCTGGAGGCGTTGACCCTGCTACAGATCATTTGTTTGCAAGCTCTCCTGTGCCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCCGATCATTTTTTGCCTTTTGTGCCGGTGACATCTCTGCAGCAACACCACCATCACCAGCAGCAGATTGTGGCGGCGGCAGCAGCAGCTGCTGTCCATCCTCAGCTGCAGCCTCAGTATCACCGACAGGTCGGCCATTTTGGGTCAACTCCGAGTGGGCAATTCGAGCATCCGTTTTCAACGAGGCAAACACAGCCAGTTCACAGGGTGGGTACACCATTGCATAATTCAATGATGAATCACGTTGAGGACTTGGAATCGGCTAATGCCACGGGAGGAAGGAAGGTTATTGCTCTATTTCCAACTGGGGATGATTAA 930 54.41 MREDDSNWFSRWEEELPSPDELMPLSQTLITPDLALAFKIQNPSNSPPQRGALPPPSQLASSAAAGGCSGATTQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSGGGAAVVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTSLQQHHHHQQQIVAAAAAAAVHPQLQPQYHRQVGHFGSTPSGQFEHPFSTRQTQPVHRVGTPLHNSMMNHVEDLESANATGGRKVIALFPTGDD 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52866826 52867755 + Bma022522.1 Bma05g01331 83415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01331 309 MobiDBLite consensus disorder prediction 62 83 - -
Bma05g01331 309 Gene3D - 98 160 - -
Bma05g01331 309 MobiDBLite consensus disorder prediction 39 95 - -
Bma05g01331 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 154 IPR006447 GO:0003677
Bma05g01331 309 Pfam Myb-like DNA-binding domain 105 153 IPR001005 -
Bma05g01331 309 SUPERFAMILY Homeodomain-like 98 158 IPR009057 -
Bma05g01331 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 157 IPR017930 -
Bma05g01331 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 309 IPR044841 GO:0003700|GO:0006355
Bma05g01331 309 MobiDBLite consensus disorder prediction 1 23 - -
Bma05g01331 309 MobiDBLite consensus disorder prediction 1 18 - -
Bma05g01331 309 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01331 Bma-Chr5:52866826 Bma07g00742 Bma-Chr7:20021750 1.34E-23 dispersed
Bma14g01699 Bma-Chr14:36135175 Bma05g01331 Bma-Chr5:52866826 1.04E-14 dispersed
Bma07g00088 Bma-Chr7:1669228 Bma05g01331 Bma-Chr5:52866826 4.31E-43 transposed
Bma01g02700 Bma-Chr1:84437522 Bma05g01331 Bma-Chr5:52866826 4.19E-177 wgd
Bma04g01144 Bma-Chr4:28858431 Bma05g01331 Bma-Chr5:52866826 1.29E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57396 PF00249 Myb_DNA-binding 2.30E-08 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01331 - - csv:101216969 411.764