Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01350 ATGCTCCGGCGGCCTGGTAAGCAACAGCCGGAGTCAATTTCCGACAAGATCTATAAATTGAGAGGAGTTTTGCTGCTTCTCTCGCTTCCTCTACTCCTCATTTTCATTGTTCTCTTCGTAATGCCTACTGGAGACGATTATTCCCTCAACAACCGCAAAGTGTCCCCGGTCCATCTCTCTAAAAATACGAATACCTTTGCTGTTATCTTTGATGCTGGTAGCTCTGGTAGCCGCGTCCATGTATTTTGCTTCGATCACAATCTCGATCTCCTTCCCATTGGCCGAGACATCGAGCTTTTCAAACAGCTTCAACCGGGACTCAGTGCATATGCTGACAATCCACAAAGAGCTGCAGCTTCGCTGACCTCTCTCTTAGAGGAAGCAGAGAACGCAGTTCCGCTGGAGTTGCGTCCCTTGACACCTGTTAGAGTTGGGGCCACTGCAGGATTAAGGGCACTTGAAGGTGACACTTCGGATAGAATTTTGCAAGCAGTTAGGGATCTTTTGCAACATAAAAGCACCCTCAAGTCTGAACCAGATGGGGTTGCTGTAATTGATGGAACTAAAGAAGGTTCTTACGAGTGGGTTACTATCAATTATTTGCTCGGAAACCTGGGCAAGAAATTTCAGGATACAGTTGGAATAATTGATCTTGGCGGTGGATCAGTTCAGATGGCATATGCTATTGCAGGGACTAATGCAGAGTCAAGAATATCAGACGAGGAGAATACATACGTAAAACAAATGTATTTGAAGGGAATGAAATATAACCTTTATGTTCACAGTTATTTGCATTATGGGTTGCTGGCTGCTAGAGCAGAGATTTTGAAAGTCTCCAAAGACTCAGAAAACCCATGTATCTTAGCTGGCTATGAAGGTTCTTACAATTATGGGGGAGAGGACTTTAAGGCATCTGCTGATCCATCTGGATCCAACTTGGAGAAATGTAAACGATTAGCAATTAAGGCTCTCAAAGTCAATGAACAAACTTGTACTTACATGAAATGCACGTTTAATGGGGTATGGAACGGTGGAGGAGGAGACGGCCAGAAGAATCTATTTGTTGCTTCGTTTTTCTTTGACAGAGCTGCTGAGGCTGGTTTTGCTGATCCCAAGAAACCAACTGCAGCCGTTCATCCAGCAGATTTCGAAGATGCAGCCAGACGGGCTTGCCAAACTAAACTTGAAGATGCCAAGTCGGTGTATCGAAATGTCAAGCCAGAAAACCTTCCATACTTGTGCATGGATCTGGTTTACGAGTACACATTACTTGTCGATGGTTTTGGTCTGAATCCATGGCAGGAGATAACATTGGTGAAGCAGGTTGAATATCACAACTCTCTGGTTGAGGCAGCATGGCCTCTGGGCAGCGCCATTGAAGCAGTCTCCTCTTTATAA 1398 44.85 MLRRPGKQQPESISDKIYKLRGVLLLLSLPLLLIFIVLFVMPTGDDYSLNNRKVSPVHLSKNTNTFAVIFDAGSSGSRVHVFCFDHNLDLLPIGRDIELFKQLQPGLSAYADNPQRAAASLTSLLEEAENAVPLELRPLTPVRVGATAGLRALEGDTSDRILQAVRDLLQHKSTLKSEPDGVAVIDGTKEGSYEWVTINYLLGNLGKKFQDTVGIIDLGGGSVQMAYAIAGTNAESRISDEENTYVKQMYLKGMKYNLYVHSYLHYGLLAARAEILKVSKDSENPCILAGYEGSYNYGGEDFKASADPSGSNLEKCKRLAIKALKVNEQTCTYMKCTFNGVWNGGGGDGQKNLFVASFFFDRAAEAGFADPKKPTAAVHPADFEDAARRACQTKLEDAKSVYRNVKPENLPYLCMDLVYEYTLLVDGFGLNPWQEITLVKQVEYHNSLVEAAWPLGSAIEAVSSL 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 53045068 53052340 - Bma022538.1 Bma05g01350 83434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01350 465 Gene3D - 66 459 - -
Bma05g01350 465 Pfam GDA1/CD39 (nucleoside phosphatase) family 60 463 IPR000407 GO:0016787
Bma05g01350 465 CDD NBD_sugar-kinase_HSP70_actin 68 231 - -
Bma05g01350 465 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 1 464 IPR000407 GO:0016787
Bma05g01350 465 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 185 200 IPR000407 GO:0016787
Bma05g01350 465 Gene3D Exopolyphosphatase. Domain 2 186 443 - -
Bma05g01350 465 PANTHER APYRASE-LIKE PROTEIN 1 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00901 Bma-Chr5:46892785 Bma05g01350 Bma-Chr5:53045068 8.23E-15 transposed
Bma06g00686 Bma-Chr6:36760524 Bma05g01350 Bma-Chr5:53045068 6.11E-42 transposed
Bma06g00710 Bma-Chr6:37524215 Bma05g01350 Bma-Chr5:53045068 2.56E-44 transposed
Bma01g02679 Bma-Chr1:84279046 Bma05g01350 Bma-Chr5:53045068 1.03E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01350 K14641 - csv:101220305 651.358