Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01403 ATGGCAGGTGCAATGGATCTACACAGTTCTACATATTCTCTGTCAGATCCCTATGGAGGTGAGCTAATGGAAGCTCTTGGACCTTATATCAAAAGTGCTTCTTCTCCTCCACCTACCTTTTTTTCTTCTTCTTCTTCTTTTTCTTCTCTTCCTCAAAACGGTCTCTCTTTCTCCCCTTCCCTCCCATCAATGGACTTTTTCGATTCAAATGGTTGCTCTGGTTCGACGAACTCTGTAGTTTTAGACGAGTTCTCAACCCAACCTTTTCTTAATTTGGAGCAGCCATGGCCAATTGGCCTAAATCAACTTACCCCATCTCAGATCTACCAGATCCAAGCTCAGATCCAGCAGAATTACTCGCCAGAACTTGATTTCGAACGGACCGACCAGCGTATATACTCCAGTAATAGTAAGCTAAACTTCCTTGGTCCGAAACCCATTGAAATGAAGCAAGTGGGTTCCCCATTAAAGCCGACGAAGCTTTACAGAGGAGTTAGACAGAGGCACTGGGGGAAATGGGTAGCTGAGATTCGTCTCCCGAGGAATCGAACTCGGCTATGGCTTGGTACCTTCGATACGGCAATAGAAGCCGCGTTAGCTTACGACCAAGCTGCCTACAAGCTCAGAGGCGATTTCGCGAGGCTTAATTTTCCAAATCTGAAGCACAAAGGCGAATTAGGCGACTATAAGCCTCTCCATTCCTCGATTGATGCGAAGCTCCAGGCAATTTGCCAAAGCTTGGCTGAATCGCAGAAACAGGGGAAAACAGAGAAGCCTCGCACTGCCAGAAAAGCGCAAAAGGTCCAAGTGCAGCCACCGGTGGACGAAGTGCAGTCGAAAGAAACAGAGATCAACAATCAGGTGGGAAACTCCCCGTCGTCGGCGATAACAGACAGCGACGGGTCAGTAGGATCTTCACCTCTGTCAGATCTGACGTTTCCGGACATAACAGAGTCACCATGGGAGCAGTTTTCGGAGAATTTCGCGTTGCAGAAATATCCTTCCGAGATTGATTGGGCAGCCATCCTATCTTCCTAA 1038 47.69 MAGAMDLHSSTYSLSDPYGGELMEALGPYIKSASSPPPTFFSSSSSFSSLPQNGLSFSPSLPSMDFFDSNGCSGSTNSVVLDEFSTQPFLNLEQPWPIGLNQLTPSQIYQIQAQIQQNYSPELDFERTDQRIYSSNSKLNFLGPKPIEMKQVGSPLKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAIEAALAYDQAAYKLRGDFARLNFPNLKHKGELGDYKPLHSSIDAKLQAICQSLAESQKQGKTEKPRTARKAQKVQVQPPVDEVQSKETEINNQVGNSPSSAITDSDGSVGSSPLSDLTFPDITESPWEQFSENFALQKYPSEIDWAAILSS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 53422745 53423782 + Bma022587.1 Bma05g01403 83487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01403 345 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
Bma05g01403 345 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700|GO:0006355
Bma05g01403 345 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Bma05g01403 345 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 341 - -
Bma05g01403 345 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Bma05g01403 345 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Bma05g01403 345 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Bma05g01403 345 MobiDBLite consensus disorder prediction 272 315 - -
Bma05g01403 345 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 341 - -
Bma05g01403 345 SUPERFAMILY DNA-binding domain 161 218 IPR016177 GO:0003677
Bma05g01403 345 CDD AP2 160 220 IPR001471 GO:0003700|GO:0006355
Bma05g01403 345 MobiDBLite consensus disorder prediction 250 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01424 Bma-Chr1:24099779 Bma05g01403 Bma-Chr5:53422745 4.88E-72 dispersed
Bma05g01291 Bma-Chr5:52274680 Bma05g01403 Bma-Chr5:53422745 3.99E-34 dispersed
Bma05g01403 Bma-Chr5:53422745 Bma08g00577 Bma-Chr8:34216703 4.84E-32 dispersed
Bma15g01036 Bma-Chr15:41516200 Bma05g01403 Bma-Chr5:53422745 1.76E-71 transposed
Bma01g02621 Bma-Chr1:83780233 Bma05g01403 Bma-Chr5:53422745 1.78E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57402 PF00847 AP2 8.50E-15 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01403 K09286 - jre:108984027 345.125