Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g01403 | ATGGCAGGTGCAATGGATCTACACAGTTCTACATATTCTCTGTCAGATCCCTATGGAGGTGAGCTAATGGAAGCTCTTGGACCTTATATCAAAAGTGCTTCTTCTCCTCCACCTACCTTTTTTTCTTCTTCTTCTTCTTTTTCTTCTCTTCCTCAAAACGGTCTCTCTTTCTCCCCTTCCCTCCCATCAATGGACTTTTTCGATTCAAATGGTTGCTCTGGTTCGACGAACTCTGTAGTTTTAGACGAGTTCTCAACCCAACCTTTTCTTAATTTGGAGCAGCCATGGCCAATTGGCCTAAATCAACTTACCCCATCTCAGATCTACCAGATCCAAGCTCAGATCCAGCAGAATTACTCGCCAGAACTTGATTTCGAACGGACCGACCAGCGTATATACTCCAGTAATAGTAAGCTAAACTTCCTTGGTCCGAAACCCATTGAAATGAAGCAAGTGGGTTCCCCATTAAAGCCGACGAAGCTTTACAGAGGAGTTAGACAGAGGCACTGGGGGAAATGGGTAGCTGAGATTCGTCTCCCGAGGAATCGAACTCGGCTATGGCTTGGTACCTTCGATACGGCAATAGAAGCCGCGTTAGCTTACGACCAAGCTGCCTACAAGCTCAGAGGCGATTTCGCGAGGCTTAATTTTCCAAATCTGAAGCACAAAGGCGAATTAGGCGACTATAAGCCTCTCCATTCCTCGATTGATGCGAAGCTCCAGGCAATTTGCCAAAGCTTGGCTGAATCGCAGAAACAGGGGAAAACAGAGAAGCCTCGCACTGCCAGAAAAGCGCAAAAGGTCCAAGTGCAGCCACCGGTGGACGAAGTGCAGTCGAAAGAAACAGAGATCAACAATCAGGTGGGAAACTCCCCGTCGTCGGCGATAACAGACAGCGACGGGTCAGTAGGATCTTCACCTCTGTCAGATCTGACGTTTCCGGACATAACAGAGTCACCATGGGAGCAGTTTTCGGAGAATTTCGCGTTGCAGAAATATCCTTCCGAGATTGATTGGGCAGCCATCCTATCTTCCTAA | 1038 | 47.69 | MAGAMDLHSSTYSLSDPYGGELMEALGPYIKSASSPPPTFFSSSSSFSSLPQNGLSFSPSLPSMDFFDSNGCSGSTNSVVLDEFSTQPFLNLEQPWPIGLNQLTPSQIYQIQAQIQQNYSPELDFERTDQRIYSSNSKLNFLGPKPIEMKQVGSPLKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAIEAALAYDQAAYKLRGDFARLNFPNLKHKGELGDYKPLHSSIDAKLQAICQSLAESQKQGKTEKPRTARKAQKVQVQPPVDEVQSKETEINNQVGNSPSSAITDSDGSVGSSPLSDLTFPDITESPWEQFSENFALQKYPSEIDWAAILSS | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 53422745 | 53423782 | + | Bma022587.1 | Bma05g01403 | 83487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g01403 | 345 | SMART | rav1_2 | 161 | 224 | IPR001471 | GO:0003700|GO:0006355 | |
Bma05g01403 | 345 | Gene3D | AP2/ERF domain | 161 | 219 | IPR036955 | GO:0003700|GO:0006355 | |
Bma05g01403 | 345 | ProSiteProfiles | AP2/ERF domain profile. | 161 | 218 | IPR001471 | GO:0003700|GO:0006355 | |
Bma05g01403 | 345 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 | 1 | 341 | - | - | |
Bma05g01403 | 345 | Pfam | AP2 domain | 162 | 210 | IPR001471 | GO:0003700|GO:0006355 | |
Bma05g01403 | 345 | PRINTS | Ethylene responsive element binding protein signature | 184 | 200 | IPR001471 | GO:0003700|GO:0006355 | |
Bma05g01403 | 345 | PRINTS | Ethylene responsive element binding protein signature | 162 | 173 | IPR001471 | GO:0003700|GO:0006355 | |
Bma05g01403 | 345 | MobiDBLite | consensus disorder prediction | 272 | 315 | - | - | |
Bma05g01403 | 345 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 1 | 341 | - | - | |
Bma05g01403 | 345 | SUPERFAMILY | DNA-binding domain | 161 | 218 | IPR016177 | GO:0003677 | |
Bma05g01403 | 345 | CDD | AP2 | 160 | 220 | IPR001471 | GO:0003700|GO:0006355 | |
Bma05g01403 | 345 | MobiDBLite | consensus disorder prediction | 250 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01424 | Bma-Chr1:24099779 | Bma05g01403 | Bma-Chr5:53422745 | 4.88E-72 | dispersed | |
Bma05g01291 | Bma-Chr5:52274680 | Bma05g01403 | Bma-Chr5:53422745 | 3.99E-34 | dispersed | |
Bma05g01403 | Bma-Chr5:53422745 | Bma08g00577 | Bma-Chr8:34216703 | 4.84E-32 | dispersed | |
Bma15g01036 | Bma-Chr15:41516200 | Bma05g01403 | Bma-Chr5:53422745 | 1.76E-71 | transposed | |
Bma01g02621 | Bma-Chr1:83780233 | Bma05g01403 | Bma-Chr5:53422745 | 1.78E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57402 | PF00847 | AP2 | 8.50E-15 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g01403 | K09286 | - | jre:108984027 | 345.125 |