Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00001 ATGATGGGTCTCCATTCGGGTGTGGACACTTCCTTTCTGGCAATGGATGGTGTTGTGGTTGTGGACCTTGATTATAATTGTATAACCACGACTGAGGAAATACCTCCTATTCCAGAACCAGAATTGAGCTCTCTACGTGGTGATATAATGAAGTTACTGTGTCCAAATGTTGTGGGCATAGATGAGATGAAGGCTAATTTATTCAGTTCATCTGAGCATTATTTCAAGGGTGGAATTAAGCCTTGGGGAGATGATCATGACCTTCAACTTAGGTTGATTTTTCTCAAGTTTTTTGCATCGCTCTTAAGTGGCTATCGCAATTATATAGGAAATACTGCTAGTCAAGTTTTCAACACTCAAGCATTTCTAAAGAAGCGCTCTCGGTTCACTAATCAGCCGACAGAGCCCATGATAAGTCAATTCCTAGACTCACAAGGATTCTTGGATTATCTGGAGAGGGGTGTTGGTTCTGATGAGAACAATAATAATCTTCTGGACAAGTTACAAGATGCCATTGAAAGGGGTCAAAATCCTATTTCAATTTTTCCATCCTCTGTTTCTGAGCTTGAGATTACAACAATATCTGATCCTGATGCCACAACATCGGGTCTGGGTGCCAAATATACTTATGATAGGTTTCCCTCAAACATAAGAACGGAGGAGCAGAAAGAAAAGAGGAAGCAGATTCTTGCAGCTGTCACTGGTGCATTTGAATACTCAACAAAGCAAATTCCTAGTTCCCCTTCTTTGCTAATGGGTAAGGACTCCAAAATGGAAAGCCTTAGCCCAATGGAGAGACGTGCAGAAAGAGAGCGCATGGTTTTGGACATAAAAGTTAAGCTTCAGGGCTTGTGGCTACGCCTTCTTAAACTGGAAGCAACTGATGATCCTCTTTCATCATTTGAATATGGCACAATCCTTGCTTTGATTGAATCTGATGCAGAAGGCATTGGTGGTAGCGGGTTTGTTGAATGTATAAGAGAACACATTAATTCTGGATGGATTTGTCAACTGACAGATGAACAGTTTATTGCAGTTAAAGAATTGCTTAAAATAGCAATTAGTCGTGCAACTTCTCGTAATGATATACCAACTATAAGAGATGCCCTGGAAGTTTCCGCTGAAATATCCAAGAAGGATCCAAATAATGTTTCTGACTACATCCAACGCCATCTCATTTCAATGTCTATTTGGGAGGAACTGAGGTTTTGGGAAGGATACTTTGAGTATTTGATGGAAAGGTCATCTAACAAGTCAGCCAATTATGCATCTCTAGTTTCTTCACAGCTAATAATTGTCGCATCTCATATGGCTGGGTTAGGACTTCCTGACACTGATGTGTGGTACATGATTGAAACAATTGCAGAGAAAAACAACATCGGATACAAGCAACTAATAAAACTCAGAGGATTCTTGTCTTATATCCAACAACTGCGAATGGGTTACTGGGGAATATCATCTGCAAAGAGCCAATCCATGTCAGCTTATGGATTGCAATCTCCCCGTCCAAAAGATGCATCTGATGCGAATCAGCAAAATGTTGAGGCTTCTGGAAGGAGCTGGGTTCAGAGCATGTTCAGCAGGGATGCAACATCAAGGACAAATTCATTTGGCCGTGTTCGGGGATGGGCATCTGAGGGCCATGCTTCAGCTGCAACTGAGAATGGGATTTCTCACAAACAAGATATCTAG 1692 41.31 MMGLHSGVDTSFLAMDGVVVVDLDYNCITTTEEIPPIPEPELSSLRGDIMKLLCPNVVGIDEMKANLFSSSEHYFKGGIKPWGDDHDLQLRLIFLKFFASLLSGYRNYIGNTASQVFNTQAFLKKRSRFTNQPTEPMISQFLDSQGFLDYLERGVGSDENNNNLLDKLQDAIERGQNPISIFPSSVSELEITTISDPDATTSGLGAKYTYDRFPSNIRTEEQKEKRKQILAAVTGAFEYSTKQIPSSPSLLMGKDSKMESLSPMERRAERERMVLDIKVKLQGLWLRLLKLEATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINSGWICQLTDEQFIAVKELLKIAISRATSRNDIPTIRDALEVSAEISKKDPNNVSDYIQRHLISMSIWEELRFWEGYFEYLMERSSNKSANYASLVSSQLIIVASHMAGLGLPDTDVWYMIETIAEKNNIGYKQLIKLRGFLSYIQQLRMGYWGISSAKSQSMSAYGLQSPRPKDASDANQQNVEASGRSWVQSMFSRDATSRTNSFGRVRGWASEGHASAATENGISHKQDI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 154053 170889 + Bma022602.1 Bma06g00001 83503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00001 563 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 1 563 - -
Bma06g00001 563 Pfam dDENN domain 117 167 IPR005112 -
Bma06g00001 563 ProSiteProfiles Tripartite DENN domain profile. 1 162 IPR037516 -
Bma06g00001 563 PANTHER C-MYC PROMOTER BINDING PROTEIN 1 563 - -
Bma06g00001 563 Gene3D - 1 107 IPR043153 -
Bma06g00001 563 SMART dDENN_cls 86 154 IPR005112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00001 - - - mcha:111008717 876.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00001 Bma-Chr6:154053 Bma06g00032 Bma-Chr6:626025 5.31E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00001 Bma_Chr06 FPKM 10.709904 9.561659 14.555037 12.555354 19.406208 19.091583 17.253082 18.026344 18.21612 17.941994