Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00006 ATGGCGGAAGTGGAAGATAGGCCTCGCGTTTCCTCGAAGGAAGAAACTAAGAAGAAACGGAAGAGAAAGAGGCCTGTTAGAGCAATTTCGTCTGCTAATGAAGGAGAATCGGAGATCTGTAATCCAGGTTTGGAAGAAGATGAAGATGGGATTGGTGAGCGATCAGAGAGAGAGAAGAAAAGCGGGAAGAAGAAGTCTAAGGCGGTGGATGCGGTGGGGGAGAAGCCGGATGAGGATGACGACGAGAATCAGAACGAGGATAAGGTAGAAACTGATGATGAAGGGGGAAAGGAGGAGGATATCGGAAAGGAGAAGAAGAAGGTTAAGACTAATTCATCGGGGATTATGACTACAGTGTCTTTTACTTCTCTTGAATTGTCTGAACACACTATTAGGGCCATTAAGGATATGGGATTCGAGCATATGACTCAGATACAATCTAGGGCCGTACCTCCACTATTGCTTGGAAAAGATGTTCTTGGTGCTGCAAGAACTGGTTCAGGGAAAACTCTGGCTTTTCTAATCCCAGCTGTAGAGTTGCTATATCATATACATTTTACTCCACGTAATGGAACAGGCGTTGTTGTAATATGCCCAACTAGGGAACTTGCAATGCAGACTTATGCTGTGGCAAAGGACCTTCTTAAGTATCACTCCCAGACACTCGGCCTTGTTATTGGTGGTAATGCTAGGCGAGGAGAAGCGGAACGAATTGTGAAAGGAGTTAATTTATTAGTGGCAACTCCTGGCCGACTTCTTGACCATCTTCAAAATACCAAGGGTTTTATATATAAAAACCTTAAGTGCCTTATGATTGATGAAGCTGATAGGATACTGGAAGCAAACTTTGAAGAAGAAATGAAGCAAATTATTAAACTCCTTCCCAAGAATAGGCAGACTGCTTTATTTTCTGCCACTCAAACTCAAAAGGTCGAAGATCTTGCTCGCTTGTCATTCCAGACAACTCCTATTTATATTGATGTGGATGATGGACGAACCAAGGTCACAAATGAAGGTCTGCAGCAAGGCTATTGTGTTGTGCCAAGTGCTAAAAGATTTATTCTTCTTTATTCCTTCTTGAAAAGGAATTTATCTAAGAAAGTCATGGTCTTCTTTTCCTCTTGTAACTCCGTCAAATTCCACTCAGACCTTCTCAGATATATTCAGGTGGATTGCCTTGATATCCATGGAAAGCAAAAGCAGCAAAAGAGGACCACTACTTTCTTTGACTTTTGCAAAGCTGAGAAGGGAATTTTACTGTGTACTGATGTTGCTGCACGTGGGCTTGACATTCCTTCTGTGGATTGGATTGTGCAATATGATCCCCCAGATGAGCCTAAGGAATACATCCATCGAGTTGGTCGAACTGCTCGTGGTGAAGGAGGGAAAGGAAATGCCCTTCTTTTCTTGATTCCAGAGGAGTTGCAATTTCTTCGCTACCTAAAGGCGGCAAAGGTTCCTGTTAAAGAATATGAATTTAGTGAAAAGAAGCTGGCTAATGTTCAGTCTCACTTGGAGAAGTTGGTGGGCAACAATTACTATTTGAACAAGTCAGCAAAAGATGCTTACAGATCATATCTATTAGCTTACAATTCCCACTCCATGAAAGATATCTTCAATGTCCACCGTCTTGATCTACAGGGTGTGGCTAGTTCATTCTGCTTTTCCAATCCTCCAAAGATCAATCTCAATATGGACAGCAACGCCTCAAAATTTAGGAAGAAAACACGCAATGTTGAAGGCAGACGACATGGATTCAGCGAGAGCAACCCTTACGGAAAAAGAGGTGAGGATGATAAGAGACAGTTTGTAAGGTATTAG 1821 42.34 MAEVEDRPRVSSKEETKKKRKRKRPVRAISSANEGESEICNPGLEEDEDGIGERSEREKKSGKKKSKAVDAVGEKPDEDDDENQNEDKVETDDEGGKEEDIGKEKKKVKTNSSGIMTTVSFTSLELSEHTIRAIKDMGFEHMTQIQSRAVPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHIHFTPRNGTGVVVICPTRELAMQTYAVAKDLLKYHSQTLGLVIGGNARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSDLLRYIQVDCLDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYEFSEKKLANVQSHLEKLVGNNYYLNKSAKDAYRSYLLAYNSHSMKDIFNVHRLDLQGVASSFCFSNPPKINLNMDSNASKFRKKTRNVEGRRHGFSESNPYGKRGEDDKRQFVRY 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 207829 211774 - Bma022607.1 Bma06g00006 83508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00006 606 Gene3D - 61 329 IPR027417 -
Bma06g00006 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 474 IPR027417 -
Bma06g00006 606 SMART helicmild6 379 460 IPR001650 -
Bma06g00006 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 325 IPR014001 -
Bma06g00006 606 Pfam DEAD/DEAH box helicase 143 314 IPR011545 GO:0003676|GO:0005524
Bma06g00006 606 PANTHER RNA HELICASE 82 595 - -
Bma06g00006 606 Pfam Domain of unknown function (DUF4217) 501 561 IPR025313 -
Bma06g00006 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 327 IPR027417 -
Bma06g00006 606 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Bma06g00006 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Bma06g00006 606 Pfam Helicase conserved C-terminal domain 356 459 IPR001650 -
Bma06g00006 606 MobiDBLite consensus disorder prediction 1 109 - -
Bma06g00006 606 MobiDBLite consensus disorder prediction 95 109 - -
Bma06g00006 606 CDD DEADc_DDX18 130 327 IPR044773 GO:0003724|GO:0005524
Bma06g00006 606 SMART DUF4217_3 500 563 IPR025313 -
Bma06g00006 606 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 82 595 - -
Bma06g00006 606 SMART ultradead3 138 343 IPR014001 -
Bma06g00006 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 509 IPR001650 -
Bma06g00006 606 MobiDBLite consensus disorder prediction 573 606 - -
Bma06g00006 606 MobiDBLite consensus disorder prediction 75 94 - -
Bma06g00006 606 Gene3D - 336 580 IPR027417 -
Bma06g00006 606 MobiDBLite consensus disorder prediction 47 74 - -
Bma06g00006 606 CDD SF2_C_DEAD 340 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00006 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - sind:105164333 910.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00006 Bma-Chr6:207829 Bma02g00286 Bma-Chr2:3318575 1.41E-56 dispersed
Bma01g02375 Bma-Chr1:81388523 Bma06g00006 Bma-Chr6:207829 8.67E-47 transposed
Bma02g01416 Bma-Chr2:56393912 Bma06g00006 Bma-Chr6:207829 1.43E-68 transposed
Bma06g01011 Bma-Chr6:46653136 Bma06g00006 Bma-Chr6:207829 4.86E-86 transposed
Bma07g00446 Bma-Chr7:5422495 Bma06g00006 Bma-Chr6:207829 1.85E-71 transposed
Bma07g00791 Bma-Chr7:23571457 Bma06g00006 Bma-Chr6:207829 7.45E-17 transposed
Bma07g01642 Bma-Chr7:52009572 Bma06g00006 Bma-Chr6:207829 5.98E-66 transposed
Bma09g00483 Bma-Chr9:39993214 Bma06g00006 Bma-Chr6:207829 8.59E-33 transposed
Bma13g01054 Bma-Chr13:43229623 Bma06g00006 Bma-Chr6:207829 3.49E-62 transposed
Bma06g00006 Bma-Chr6:207829 Bma06g00025 Bma-Chr6:562240 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00006 Bma_Chr06 FPKM 4.44519 4.040477 5.616929 4.527451 1.050387 1.21243 3.13694 0.80618 0.332162 0.728115