Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00016 ATGGCGGTTGACTCAGATTCATTGTCTCCTTCTCTCAATAAGCGCTTGAAAACCCTAGCCACGACCTCGACCTTCAATTTTCCGTTCAATGTCGACTCGAAAGCTAATAAACTGGAGAATTCTTCGCAAATCTGTGTTATTTGCTTGTCGGAAGACGGGAAAACTGACGCAGGCCAGCTCAATTGCTGTGACCACTACTTTTGCTTTGTTTGTATTATCGAGTGGGGGAAGATTGAGTCTAAGTGCCCCTCGTGCAAGCGTAGATTTTCCACTATTTGCAGGATACCAATTGACGGTTCTCGTCGACGTGTAGTTAAGATCCCTGCGTGCAATTCTTCTGAAAATCTATCTGGCGAACCTTATGATCCTTATGCCCACGTTCGATGTAATATATGTAATGGCATGGAAGATGATAGTCTTATGTTACTTTGTGATGTTTGTGATTCAGCTTCTCATACATATTGTGTTGGCTTGGGTACAACTGTTCCTGAAGGTGATTGGTTCTGTCGGGTCCTGCACATAAATGGTAGGAATGCTTCTGCCCGGAGTCAAACTGGTTTGGATGGGGATGATCGAATTAACCTTAGATTGGGGACAGTAATTGGAAGAGTACCCTCTTGTCCAAACAATAAGGCTAAGGCTTTAGTTACTTCGGACAGAAGCAATGTAAGTAACGAAAGTAGAACTTTGCATCGTTGTCGTAATATTCATACGCATATAAGAGCTTTACGTGAAAATTGGCATGATTTGCGAAGAGGGTCATTGAGCTTTCCGTCAAGTTCATTAACAGATTGTGGCAATAAGAAAAAGTTGGAGGTCGACCTTTCAACTTCCACCAGTTGTCAGAAAGCTGAAAGCTCAAATGAAGAAAGAAGCTTAGGTGATGTCGAGAAGGCTTGGAAGATGATGAAAATTGCCAAGACAATATGTGAGAGCACGAGCCGAGTTAATCCGACTCCTCCTGGGAGACAAACTAAACCGAAAAATGCCTGTTCTACGACTTCAAATGCATCGGTTGTTGGAAATCAGCAATTCAAACGCAAAGATCTGGTGAGAACTGCTGTAAGAAATCAGGGGCGTTGGTCTTGGGTGAATGATGAGTTGAAACACCAATCAGTAGTGAAGGATGAGCATAATAGATGTCTGGTTGCAAGGAAGGAGAATTCAGAATCAAATAAAGGAAACCCACCGAGATCATGCTGCTCGGACGATCATGAAAATGGAACAGGATCATCAAGGAATAGCAAAATGAAAGGTCCTGATGGAAATTGCAGATCGGGAAAAGATTATGTTAATATGGAGGAAACCAATATCCCTGATGCCAAAAGTAAAATTCAATCCTTGGTGAAGATCAACTTAAAGCTTCTCAGCAGAGACAAAAAACTGGGAGTCGATACATTCAAGAAAGCTGCAAGGCTTGCCACCCACACGATCTTAGCAGCATGTGATTTAGAGCCGAGGAAGCTGAATTCTTACTCGGTCCCAAACTCGACTTGCAATCACCAAAAAGATATTCAGGGGAGGCTTCGGAAAGTGTCGTTAATGCCAAATTGCTGTGAAGAATGCTTTTATGTAGTTGTGCAGGACATTGTCAAGACTGCCATGGAAGAGAACTTGGGCTGCTCTAGTAAATCAAATAGACATTAG 1647 42.56 MAVDSDSLSPSLNKRLKTLATTSTFNFPFNVDSKANKLENSSQICVICLSEDGKTDAGQLNCCDHYFCFVCIIEWGKIESKCPSCKRRFSTICRIPIDGSRRRVVKIPACNSSENLSGEPYDPYAHVRCNICNGMEDDSLMLLCDVCDSASHTYCVGLGTTVPEGDWFCRVLHINGRNASARSQTGLDGDDRINLRLGTVIGRVPSCPNNKAKALVTSDRSNVSNESRTLHRCRNIHTHIRALRENWHDLRRGSLSFPSSSLTDCGNKKKLEVDLSTSTSCQKAESSNEERSLGDVEKAWKMMKIAKTICESTSRVNPTPPGRQTKPKNACSTTSNASVVGNQQFKRKDLVRTAVRNQGRWSWVNDELKHQSVVKDEHNRCLVARKENSESNKGNPPRSCCSDDHENGTGSSRNSKMKGPDGNCRSGKDYVNMEETNIPDAKSKIQSLVKINLKLLSRDKKLGVDTFKKAARLATHTILAACDLEPRKLNSYSVPNSTCNHQKDIQGRLRKVSLMPNCCEECFYVVVQDIVKTAMEENLGCSSKSNRH 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 432151 434491 + Bma022621.1 Bma06g00016 83518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00016 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 94 IPR013083 -
Bma06g00016 548 MobiDBLite consensus disorder prediction 385 425 - -
Bma06g00016 548 ProSiteProfiles Zinc finger RING-type profile. 45 86 IPR001841 -
Bma06g00016 548 PANTHER F18C1.6 PROTEIN 8 170 - -
Bma06g00016 548 PANTHER F18C1.6 PROTEIN 211 539 - -
Bma06g00016 548 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 211 539 - -
Bma06g00016 548 SUPERFAMILY RING/U-box 35 92 - -
Bma06g00016 548 SMART PHD_3 128 173 IPR001965 -
Bma06g00016 548 MobiDBLite consensus disorder prediction 313 336 - -
Bma06g00016 548 MobiDBLite consensus disorder prediction 388 419 - -
Bma06g00016 548 SMART ring_2 45 85 IPR001841 -
Bma06g00016 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 187 IPR013083 -
Bma06g00016 548 SUPERFAMILY FYVE/PHD zinc finger 114 170 IPR011011 -
Bma06g00016 548 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 8 170 - -
Bma06g00016 548 Pfam PHD-finger 128 170 IPR019787 -
Bma06g00016 548 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00016 - - - cmo:103495032 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00016 Bma-Chr6:432151 Bma14g01311 Bma-Chr14:23971671 5.67E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57404 PF00628 PHD 4.10E-09 CL0390 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00016 Bma_Chr06 FPKM 9.73096 10.770952 13.012543 12.463606 13.490561 12.872656 15.113419 18.47629 18.271099 16.378294