Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00019 AAGATGATTTCTAATTCAAAACAAAAGGGTGATTTTCAAGCAAAGCAAGAGGGTGAGATCGATTATGGGAAGATCTCCAAGGCATCTACAAGTGCAAGGCAATGGTTCGGGTTAAGAAATCCGAGAATCGTCCGAGTTTCTCGATCGTTCGGAGGAAAAGACAGACATAGTAAAGTATGCACCATAAAAGGGTTAAGAGACAGAAGGATTAGACTTTCAGTCCCCACTGCAATTCAGCTTTATGATCTTCAAGAACGCCTCGACCTTGGCCAACCCAGCAAGGTGATCGATTGGCTGTTAGAAGTGACGAAACTCGATATCGATAAGCTCCCTCCGCTTCAATTTTCAGGATTCGGACAATTTCCTCAACACATGCTAGTTTCTCACGATTTAATCAGTAATCAATCCAATCAATCTTCATCGATTTTCCCATTTTTCGATGCAAATAGCACTTCAACTTTCATGAAGGATGTAGAAGATGGTGATTCAGTGAGAGCAAAAAGTAAAGGGAAGGGGATAAGATCAACTGATCATCATCATGATCATCATCAGACGAATCAAGAGAGACTTGGCGATTTCCCTACACAGATTGGAGCTCAGAATTTTCTTCTCAACAATTCTCTTTCCGAAAATACTTCGAGTTTATCGATCGGAGGTCATGGATTATATTCGTCACAGATCGAAGATCATCACCCGAACGATACGACATTCTTCGCCCCGTCAGGATCACAGTTGTTCTACTGTCCACCATCGACAACGCCTGCACTTTTTACACCTTACCCTTCCTATATTACCACCCAAGCAGAGAATGAACAACGGCAATTCAACCATATCCAATTTCTCGGCTCGAGTTTGTCCGTCGTACCGACTCTCCATTCGTTTCCTCAACTTCTTCTTCCGCAACAGAATGGCAGCCAAGAGAAGGATAATAATGCCACTCGTTCATGA 948 42.72 KMISNSKQKGDFQAKQEGEIDYGKISKASTSARQWFGLRNPRIVRVSRSFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQERLDLGQPSKVIDWLLEVTKLDIDKLPPLQFSGFGQFPQHMLVSHDLISNQSNQSSSIFPFFDANSTSTFMKDVEDGDSVRAKSKGKGIRSTDHHHDHHQTNQERLGDFPTQIGAQNFLLNNSLSENTSSLSIGGHGLYSSQIEDHHPNDTTFFAPSGSQLFYCPPSTTPALFTPYPSYITTQAENEQRQFNHIQFLGSSLSVVPTLHSFPQLLLPQQNGSQEKDNNATRS 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 446399 447346 + Bma022624.1 Bma06g00019 83521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00019 315 MobiDBLite consensus disorder prediction 163 188 - -
Bma06g00019 315 Pfam TCP family transcription factor 52 185 IPR017887 -
Bma06g00019 315 PANTHER TRANSCRIPTION FACTOR TCP17 2 295 - -
Bma06g00019 315 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Bma06g00019 315 MobiDBLite consensus disorder prediction 163 189 - -
Bma06g00019 315 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 295 IPR005333 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00019 Bma08g00244 CCT
Bma03g00857 Bma06g00019 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01071 Bma-Chr1:11280842 Bma06g00019 Bma-Chr6:446399 2.42E-46 dispersed
Bma01g01086 Bma-Chr1:11430176 Bma06g00019 Bma-Chr6:446399 4.79E-48 dispersed
Bma06g00019 Bma-Chr6:446399 Bma08g00244 Bma-Chr8:3055317 3.25E-55 dispersed
Bma08g00245 Bma-Chr8:3055831 Bma06g00019 Bma-Chr6:446399 4.08E-09 transposed
Bma03g00857 Bma-Chr3:8234956 Bma06g00019 Bma-Chr6:446399 5.19E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57405 PF03634 TCP 1.30E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00019 - - qsu:112017684 266.929