Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00038 AGAATGGCGTCGTCTATAGTTTCTTCAGCCACGATGGCAGCCATTAACAGGGCTACGCCAGTTCAGTCTAACATGGTTGCTCCTTTCACCGGCCTCAAATCCTCCTCCGCCTTCCCCGTCACCCGCAAGCCCAGCTCCGACTTCTCCTCCCTCCCCACCAACGGCGGCCGAGTGTGGCCTCCAAGGGGGTTGAAGAAGTTCGAGACTCTTTCATATCTTAGAGATCTGAGCAGAGAGGAATTACTTAAACAAGTTGCTTATCTTCTCCGAAATGGCTGGGTTGCCTGCATTGAGTTCGAGTTGGAGAAGGGATGGGTTCACCGTGAGTACCACGCGTCGCCGGGATACTACGACGGCCGGTACTGGACCATGTGGAAGCTACCCATGTATGGCTGCACCGACCCTTCTCAGATTTTGAACGAAGTGGACGAGTGCAACAAAGAGTATCCAAATTCCTTCATCCGAATCATCGGATTCGACAATGTCCGCCAAGTGCAGTGCATTAGTTTCATCGCCCTCAAGCCTTCTGTCACGCTCGAAAAGGGCCCGCCACAGGAACCACCAAGCGCAAAACCGACTCTACCTTTATACGCTTATGCAAATACTCAACATTTTACTGCTATAAAATATAAATATTTTTAG 642 50.62 RMASSIVSSATMAAINRATPVQSNMVAPFTGLKSSSAFPVTRKPSSDFSSLPTNGGRVWPPRGLKKFETLSYLRDLSREELLKQVAYLLRNGWVACIEFELEKGWVHREYHASPGYYDGRYWTMWKLPMYGCTDPSQILNEVDECNKEYPNSFIRIIGFDNVRQVQCISFIALKPSVTLEKGPPQEPPSAKPTLPLYAYANTQHFTAIKYKYF 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 651157 652018 + Bma022645.1 Bma06g00038 83540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00038 213 CDD RuBisCO_small 65 175 IPR000894 -
Bma06g00038 213 Gene3D Ribulose bisphosphate carboxylase, small subunit 57 183 IPR036385 -
Bma06g00038 213 PRINTS RuBisCO small subunit signature 115 144 IPR024681 -
Bma06g00038 213 PRINTS RuBisCO small subunit signature 22 39 IPR024681 -
Bma06g00038 213 PRINTS RuBisCO small subunit signature 149 175 IPR024681 -
Bma06g00038 213 PRINTS RuBisCO small subunit signature 65 91 IPR024681 -
Bma06g00038 213 PRINTS RuBisCO small subunit signature 93 108 IPR024681 -
Bma06g00038 213 Pfam Ribulose bisphosphate carboxylase, small chain 67 175 IPR000894 -
Bma06g00038 213 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 2 176 IPR024681 -
Bma06g00038 213 SUPERFAMILY RuBisCO, small subunit 57 176 IPR036385 -
Bma06g00038 213 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 65 176 IPR000894 -
Bma06g00038 213 SMART RuBisCO_small_2_a 66 175 IPR000894 -
Bma06g00038 213 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 3 47 IPR024680 -
Bma06g00038 213 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN A, CHLOROPLASTIC 2 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00038 K01602 rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] - cit:102612988 273.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00038 Bma-Chr6:651157 Bma06g00039 Bma-Chr6:668205 4.12E-123 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g324 . Blo16g00138 . . . Bpe13g00347 Bma06g00038 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0716 Cone16ag0580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006736 0 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00038 Bma_Chr06 FPKM 11.993789 14.686935 24.551603 23.151682 12.050723 12.175657 12.738663 14.443068 12.969029 13.482021