Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00047 ATGGGTCCAAAATTTATGTTCAAACGAAAGGCTTCATCGACACAAGGTGGATCACCGAAGGAGGTCCGTCACAACGTGCACCGTCACAACATGGTCCGACTAGCCGACCTCGAGCACACAATGGCTGACATCTTTCGAGCGGAGAGGAATCTAATAGATCTTTATGTAATGTTACTGAGATTTTCAAGTTTGGTCAGTGAGACGATACCATGCCATCAAAATTATGCCTCGTCTCCTCAAAGTCAAAAAACTTATTTGAAAAAGAGATTGATGATTACCTTGAGGGAGCTGGAAGAATTGAAGCCAGCAGTGCAACGAAGGGTTGACGAGTTAAATGCAAAACAAGTATCTCAAATAAATGGGTGGGATAATAACCAACAAAATAGTTCACTCGAATGGCCTTCTGTTAGTAGACAAAGTTCGGGCTGCAATGATATTGCTAAGACACCTGGACCAGTTGTGAGAGACATTTCATGTCGAGGTTCCAGGTCGCAGCAGCTTTCATATTCAAAACCCGTGGAAGAACAATTCCGCAAATTGTCTCTTGTTATCCCGCGTCCAAAAGAGGAAACACTTTCTCGACATTCTATTTTGGGGCCAAATGGGCTTCATGGTCAGTGGCAGCCACCGATTGTCAATAAAGGGGTTCAATATCCAAGTATTGCAGACTTAACTTCTGTTGACATTCCGAGTGTACAACATTATTTAGAAAACGAGCTTGTGATTGAAAAAGATCATGGCAACTCAGAAAACAAAGAATTAGATCTGGAGTCCCTTTCTACTCCAAATGAAGATAGTCAGACACATGATGTGGATAAACCTAGTTGCTTGATCTCCTTTGAAACAATGGAAAATTCTGAACCTAATGATATTATCCGACCGCTTTCTCCTCCTCCTGTACTTGCTGAAGTGCAGGATTTGATACCTGCAGTTTCATCCCAAGTTACTGAGGTAGAATGTGCAGTGGCAGCTCCCTCATCAGATGGTTTTGTTCACGTTGAAGCTTCCTTACAGTTGCATATTTCAACGAGCATGATGGATAATTTTATGAGATTAGCAAAGTCAAATACGGATAGGGACTTAGAAACTTGTGGTGTTCTTGCTGGTTTACTTAAAAACAAAATATTTTATGTTACTACTCTGATCATACCAAAGCAGGAATCAGCATCAAATACTTGTCAGACAACAAATGAGGAGGAGATATTTGAATTGCAAGATAAACAATCCCTTTTCCCGCTTGGCTGGATTCATACACATCCATCTCAGTCATGCTTCATGTCATCTGTTGATCTTCACACGCATTATTCTTATCAGATTATGTTACCAGAATCAGTTGCAATTGTGATGGCACCTAAAGATAGCTCGAGAAACCATGGTATTTTTCGGTTGACTGCACCTGGCGGCATGTCGGTTATCAGGCAATGCCAGCAACGTGGGTTCCACCCACACAGTCAGCCTCCAGATAGCGGCCCCATCTACCAAACATGTACAGATGTCTACATGGACCCCACTCTAAGATTCGATGTTGTTGATCTTCGATAA 1542 41.96 MGPKFMFKRKASSTQGGSPKEVRHNVHRHNMVRLADLEHTMADIFRAERNLIDLYVMLLRFSSLVSETIPCHQNYASSPQSQKTYLKKRLMITLRELEELKPAVQRRVDELNAKQVSQINGWDNNQQNSSLEWPSVSRQSSGCNDIAKTPGPVVRDISCRGSRSQQLSYSKPVEEQFRKLSLVIPRPKEETLSRHSILGPNGLHGQWQPPIVNKGVQYPSIADLTSVDIPSVQHYLENELVIEKDHGNSENKELDLESLSTPNEDSQTHDVDKPSCLISFETMENSEPNDIIRPLSPPPVLAEVQDLIPAVSSQVTEVECAVAAPSSDGFVHVEASLQLHISTSMMDNFMRLAKSNTDRDLETCGVLAGLLKNKIFYVTTLIIPKQESASNTCQTTNEEEIFELQDKQSLFPLGWIHTHPSQSCFMSSVDLHTHYSYQIMLPESVAIVMAPKDSSRNHGIFRLTAPGGMSVIRQCQQRGFHPHSQPPDSGPIYQTCTDVYMDPTLRFDVVDLR 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 801560 809762 + Bma022657.2 Bma06g00047 83549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00047 513 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 335 442 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma06g00047 513 SMART pad1_6 338 466 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma06g00047 513 Gene3D Cytidine Deaminase, domain 2 330 513 - -
Bma06g00047 513 SUPERFAMILY JAB1/MPN domain 338 469 - -
Bma06g00047 513 ProSiteProfiles MPN domain profile. 339 469 IPR037518 -
Bma06g00047 513 PANTHER AMSH-LIKE PROTEASE 32 513 - -
Bma06g00047 513 Pfam USP8 dimerisation domain 21 106 IPR015063 -
Bma06g00047 513 MobiDBLite consensus disorder prediction 1 24 - -
Bma06g00047 513 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 32 513 - -
Bma06g00047 513 MobiDBLite consensus disorder prediction 246 271 - -
Bma06g00047 513 CDD MPN_AMSH_like 338 513 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Bma06g00047 513 Gene3D - 9 132 - -
Bma06g00047 513 Coils Coil 94 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00047 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - qsu:112032297 642.114
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00896 Bma06g00047 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00896 Bma-Chr3:8860622 Bma06g00047 Bma-Chr6:801560 0 dispersed
Bma05g01019 Bma-Chr5:48705450 Bma06g00047 Bma-Chr6:801560 2.58E-143 dispersed
Bma06g00040 Bma-Chr6:686178 Bma06g00047 Bma-Chr6:801560 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g306 Blo04g00830 . . . . Bpe13g00355 Bma06g00047 . Cmo13g01061 Cmo18g00038 . . . . . Cpe20g00126 . . . . . . . . . . . . . . . . . Cone13ag0305 . Lsi02g00186 Csa01g00669 Chy12g01434 Cme12g01872 . . Bda11g01770 . . . Bma03g00896 . Sed08g2186 . . Cma13g01020 Cma18g00045 Car13g00854 Car18g00039 Cpe09g01135 . Bhi08g01239 Tan05g2262 Cmetu12g0605 Lac10g0242 Hepe07g2388 . . Cla04g01086 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005782 2 1 1 3 1 1 2 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00047 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0