Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00053 ATGCCTGTAATCACCGAGACTGCTTCTGTGGGAGAACGCATCCAATTGAGAAGACCCAGAGGCCATATCATCCAACCCATTTCGGAAACAGATCTGAACCCACCTCCACAGATCCCTTCCATTATTCAATCTACTCGCAGCAAATCCACCATTTCATCTTTCCTTGTCTCCTCCTTCTCCAACCCGACAACTTCCAGTTCAGCTGTTGGCACTGAGACCATTTCTCCCGCCATTGGTGCTACCAACAAGAAGAAGAATGGTTTCTCTTCGACGACGTTCAGAGGGCTTGGATGCGCCGCCTCGGCCTCTCAGCAGGTGTCGGTTCCGGCGGTGATTCGCACGTCGGCAAATTGGCAGGGGAAGAAGACGAGGGATAGAAAGCAGAAGAAGACCTCCAAGAACAAAACCCATCAAGGAGTAGTCGAAGAGTCGAATTCCAACCTGATTTCCAATGTGAATTCAGCTAGTTGTTTGGATATTCAGGATGTTTGGTGCGGTCCTGGAATTGGGTTCTCCGCGGATGCTGCTGCGTCTGTTGATTGCGTTGTGGCGAGGAGGAATGTGTCTAACAGAAGCAAAATTGACGGAGAGAAGATGAACCAGAGGGAGGGTTCTTCTTTAGCTAGACGGATTACAAACCCGGAAGTAATTTCCTTTTTTGATTCCGACCCTGAACTTGAAGATTCAGATCCATCAGAAATTTTTGGGACAAGGTACTGTCGCCATTTTCGACATCCTTCCCCTGAAGGTCTGACTGAGCAGATAATGATGTTCCAAAATAATTGGATGATGAGTGGAAGGTTTGAAGCACATGATCAATTTAGGGACTGGAGACTCGACGTTGATAACATGTCGTATGAGGAGCTGCTCGAGCTCGGAGATAGAATTGGGTATGTGAGTACTGGGTTAAAGGATGAAGAAATAGGCCACTGTGTGATGAAAACAAAGCTCCCAATCTCTGGTGATTTCTCAAAACACTTGTTATCAAAGGTAGACAAGAAGTGCAGTATTTGTCAGGAGGAATTTGAAAGCGAGGACGACGTCGGAAAGCTTAATTGCGGTCACGGCTATCACCTGATGTGCATAAAACGGTGGCTTGCTCAGAAAAACGCTTGCCCGGTCTGTAAAATGGCGGTTTCGGGTCAACGCCAATGCATCTGA 1161 47.37 MPVITETASVGERIQLRRPRGHIIQPISETDLNPPPQIPSIIQSTRSKSTISSFLVSSFSNPTTSSSAVGTETISPAIGATNKKKNGFSSTTFRGLGCAASASQQVSVPAVIRTSANWQGKKTRDRKQKKTSKNKTHQGVVEESNSNLISNVNSASCLDIQDVWCGPGIGFSADAAASVDCVVARRNVSNRSKIDGEKMNQREGSSLARRITNPEVISFFDSDPELEDSDPSEIFGTRYCRHFRHPSPEGLTEQIMMFQNNWMMSGRFEAHDQFRDWRLDVDNMSYEELLELGDRIGYVSTGLKDEEIGHCVMKTKLPISGDFSKHLLSKVDKKCSICQEEFESEDDVGKLNCGHGYHLMCIKRWLAQKNACPVCKMAVSGQRQCI 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 856216 858728 + Bma022664.1 Bma06g00053 83555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00053 386 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 380 - -
Bma06g00053 386 CDD RING-H2_PA-TM-RING 335 376 - -
Bma06g00053 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 382 IPR013083 -
Bma06g00053 386 MobiDBLite consensus disorder prediction 117 142 - -
Bma06g00053 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 380 IPR045191 GO:0061630
Bma06g00053 386 SUPERFAMILY RING/U-box 334 380 - -
Bma06g00053 386 Pfam Ring finger domain 334 376 IPR001841 -
Bma06g00053 386 SMART ring_2 335 375 IPR001841 -
Bma06g00053 386 ProSiteProfiles Zinc finger RING-type profile. 335 376 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00053 - - - bhj:120083032 456.062
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00053 Bma08g00004 CCT
Bma06g00053 Bma08g00004 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00053 Bma-Chr6:856216 Bma08g00004 Bma-Chr8:94838 6.79E-132 dispersed
Bma11g00288 Bma-Chr11:2672202 Bma06g00053 Bma-Chr6:856216 5.11E-16 dispersed
Bma06g00053 Bma-Chr6:856216 Bma08g00043 Bma-Chr8:620757 1.46E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g278 . . . . Bpe12g00707 Bpe13g00364 Bma06g00053 . Cmo13g01045 Cmo18g00042 . . . . . Cpe20g00137 . . . . . . . . . . . . . . . . . Cone13ag0314 . Lsi02g00212 Csa01g00694 Chy12g01417 Cme12g01853 Blo13g00184 . Bda11g01777 . . . . Bma08g00004 . . . Cma13g01007 Cma18g00052 Car13g00842 Car18g00045 Cpe09g01128 . Bhi08g01262 . . Lac10g0265 . . . Cla04g01070 Cam04g1114 Cec01g1628 Cco01g1674 Clacu04g1140 Cmu04g1122 Cre01g1423 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004518 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00053 Bma_Chr06 FPKM 7.089581 8.668622 30.96179 31.31896 50.384502 51.349991 55.499504 27.187513 25.281382 26.53912