Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00057 ATGCTTTCTGTAAGGTCAGTTATCAGGGATTTTTGGAGAAGGCATAAGAAGAAGATTTATGTCACAGCTGGTGCTCTAGGAAGTGGGTATCTTCTTTACAAATTGTATGATTCTCACCGAAGAAGGCTTGCTGATCTCGAAAGAGATTTGGCAAGAGAAACTGAAAATAAACGGAACATTGACGAACTTATCAATGCCAAAATGAGAGCTCATTTCGAGAACATTCAAAGAATTGCCGATACTACAACATTGCCTCATGCAATGCACCATTTAAGTGGTCGAATAGCAGAAGAATTGGATCTTACACATCTCACAGAGAGGCTAATGAAGGGCAAGGGTCAGCCAAACACTTTAACATCTTCAGAAAAGCTTGAATTGTGGGAAAACCTCAAAATTCTAAGTTTTACGAAAATGGTATCGTCGTTGTGGGTAATGACAGTGTTGAGTTTATATATCAGAGTTCAAGTCAACATATTAGGCAGACATTTGTATATTGACACAGCCTGTGGTGTTGGGAGTTCTCATTTGCCTGAGGATGTCGATCTCATAGACCGAAACGACCAGCAAAAATTTCTTGCAAGTTCTGATTTTCTCTCCTCTTATGGTGTGCCATCCATAATTTCGAACATGCAAGTAGCTGCAAGAGATATTTTCCAGAGAAAGCAGTTGAAGGATTTGTTCAACACCGCACAACTTCGCGTAACGATCAAGCAAATGCTCGAATCGTTCATGAGCACGGAAAATCCCCATCAATGGGTTGATTACTTGATGTCCGAGGAACATTCTACGTCTTCCGCTTTCACGAAATTCGACCAGCTCATGGCCGAGACACGAGCTGTATTGTTGAGTGCTGAATTCAGGAATGTTATCGAAATATCCCTCGAAGCAGTGGTGGATGCGATCGTAGCAGCTATGGAGGCTCAACTTGCAGGAGGAAGTCTATCGTCGGGCATTCCACTTGCCAAACTCGTACCGAGAGTAGCACAGATTTGCCCTTCGATCCTCGACGAACCGAGCAATAATCAGTTCATCAAAACCATGCACAAAACAGAAGAAATTGAACTCTTCTTCACTTTCGTCTACTCAAATATGTCGAGCTCGGAATGA 1107 42.28 MLSVRSVIRDFWRRHKKKIYVTAGALGSGYLLYKLYDSHRRRLADLERDLARETENKRNIDELINAKMRAHFENIQRIADTTTLPHAMHHLSGRIAEELDLTHLTERLMKGKGQPNTLTSSEKLELWENLKILSFTKMVSSLWVMTVLSLYIRVQVNILGRHLYIDTACGVGSSHLPEDVDLIDRNDQQKFLASSDFLSSYGVPSIISNMQVAARDIFQRKQLKDLFNTAQLRVTIKQMLESFMSTENPHQWVDYLMSEEHSTSSAFTKFDQLMAETRAVLLSAEFRNVIEISLEAVVDAIVAAMEAQLAGGSLSSGIPLAKLVPRVAQICPSILDEPSNNQFIKTMHKTEEIELFFTFVYSNMSSSE 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 908315 911948 - Bma022668.1 Bma06g00057 83559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00057 368 PANTHER PEROXISOME BIOGENESIS PROTEIN 3-2-LIKE 10 366 - -
Bma06g00057 368 Pfam Peroxin-3 115 363 IPR006966 GO:0005779|GO:0007031
Bma06g00057 368 Coils Coil 36 63 - -
Bma06g00057 368 PANTHER PEROXISOMAL BIOGENESIS FACTOR 3 10 366 IPR006966 GO:0005779|GO:0007031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00057 K13336 PEX3; peroxin-3 - csin:114274727 468.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00907 Bma06g00057 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00907 Bma-Chr3:9028481 Bma06g00057 Bma-Chr6:908315 7.42E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g237 . Blo16g00124 . . . . Bma06g00057 . . . . . . . Sed08g0388 . Cpe04g01382 Bhi02g00120 Tan09g1844 Cmetu02g1177 . Hepe09g0373 . . . . . . . . . . . . Cone19ag0325 . . . . . . . . . . Bma03g00907 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004939 2 1 2 2 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00057 Bma_Chr06 FPKM 21.001719 20.635389 26.511713 29.189306 29.333315 30.823669 31.7579 33.717216 32.126251 32.119812