Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00058 ATGGGAGACGGTCTTGTTCTTCGTGGTACAATGAGGGCTCACACCGATATGGTGACGGCAATTGCCACTCCGATCGACAACGTTGACATGATTGTGACCTCTTCCCGTGACAAATCGATCATCGTTTGGCAGCTAACTAGGGGTGAGAAGACGTACGGTGTTCCGCGCCGCCGTTTGACCGGACATTCTCACTTCATCGAGGATGTTGTTCTCTCGTCCGATGGTCAATTCGCTCTCTCTGGATCGTGGGACGGCGAGCTCCGTCTCTGGGACCTTGCTGCTGGTGTCTCTGCTCGGAGATTCGTTGGGCATACTAAGGATGTGCTTTCTGTCGCATTCTCTTATGATAATCGTCAGATTGTTTCAGCCTCTCGGGACCGTACAATTAAGCTGTGGAACACTTTGGGTGAGTGCAAGTATACCATCCAGGAGGGAGATGCTCATTCAGACTGGGTCAGCTGTGTTAGATTCAGCCCTAACACTAACCAGCCGACCATTGTTTCTGCGTCGTGGGATAAGACCGTGAAGGTCTGGAACTTGTCCAATTGCAAGCTGCGGAGCACGTTGACTGGTCACGGTGGATATGTGAACACGGTTGCTGTGTCTCCTGATGGTTCACTTTGCGCAAGTGGAGGGAAGGACGGAGTGATTCTCCTGTGGGATTTGGCTGAGGGAAAGAGACTGTACTCGTTGGATGCGGGCTCTATTATTCATGCACTTTGTTTTAGCCCCAATAGGTATTGGCTTTGCGCGGCAACTGAGAACAGCATTAAGATATGGGACCTGGAGAGCAAGAGCATTGTTGAGGATTTGAAGGTCGATCTCAAGGCTGAAGCAGAGAAGACTGATGACACACATGCTGCTATTGCCAACAAGAGGAAGTATTATGAGGCCGCGCGAGCAGTTTGGTTGGCAAGTAAATCTGGGCAGAGTTATCGACATCTGTATAATCTCAGCGTTTATAGAAATATCATCTCGGTTTTCGGCCAAAACATGCTTCAATGGTTATATCCTATTGCAACAAGTCATCTGAAAGATGGTCTGAGCTTTCCCACGTCTATAGATTCATCCTAA 1074 49.07 MGDGLVLRGTMRAHTDMVTAIATPIDNVDMIVTSSRDKSIIVWQLTRGEKTYGVPRRRLTGHSHFIEDVVLSSDGQFALSGSWDGELRLWDLAAGVSARRFVGHTKDVLSVAFSYDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHSDWVSCVRFSPNTNQPTIVSASWDKTVKVWNLSNCKLRSTLTGHGGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATENSIKIWDLESKSIVEDLKVDLKAEAEKTDDTHAAIANKRKYYEAARAVWLASKSGQSYRHLYNLSVYRNIISVFGQNMLQWLYPIATSHLKDGLSFPTSIDSS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 913347 924181 + Bma022669.1 Bma06g00058 83560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00058 357 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Bma06g00058 357 Gene3D - 4 320 IPR015943 GO:0005515
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Bma06g00058 357 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Bma06g00058 357 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Bma06g00058 357 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Bma06g00058 357 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 307 IPR045223 GO:0015935|GO:0043022
Bma06g00058 357 SUPERFAMILY WD40 repeat-like 6 273 IPR036322 GO:0005515
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Bma06g00058 357 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Bma06g00058 357 PANTHER BNAA06G12310D PROTEIN 1 307 - -
Bma06g00058 357 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Bma06g00058 357 SMART WD40_4 182 221 IPR001680 GO:0005515
Bma06g00058 357 SMART WD40_4 4 44 IPR001680 GO:0005515
Bma06g00058 357 SMART WD40_4 52 91 IPR001680 GO:0005515
Bma06g00058 357 SMART WD40_4 94 133 IPR001680 GO:0005515
Bma06g00058 357 SMART WD40_4 224 261 IPR001680 GO:0005515
Bma06g00058 357 SMART WD40_4 135 179 IPR001680 GO:0005515
Bma06g00058 357 CDD WD40 7 272 - -
Bma06g00058 357 Pfam WD domain, G-beta repeat 144 179 IPR001680 GO:0005515
Bma06g00058 357 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Bma06g00058 357 Pfam WD domain, G-beta repeat 185 221 IPR001680 GO:0005515
Bma06g00058 357 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Bma06g00058 357 Pfam WD domain, G-beta repeat 235 261 IPR001680 GO:0005515
Bma06g00058 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00908 Bma06g00058 CCT
Bma06g00058 Bma08g00007 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00912 Bma-Chr3:9158800 Bma06g00058 Bma-Chr6:913347 6.80E-11 dispersed
Bma06g00058 Bma-Chr6:913347 Bma15g00603 Bma-Chr15:7614787 8.94E-19 dispersed
Bma15g00420 Bma-Chr15:4540271 Bma06g00058 Bma-Chr6:913347 6.93E-08 dispersed
Bma08g01156 Bma-Chr8:50578503 Bma06g00058 Bma-Chr6:913347 2.44E-27 transposed
Bma01g01530 Bma-Chr1:33103719 Bma06g00058 Bma-Chr6:913347 1.94E-17 transposed
Bma03g00908 Bma-Chr3:9039956 Bma06g00058 Bma-Chr6:913347 5.03E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00058 K14753 - zju:107418716 554.673