Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00065 ATGGCTAATCATTCATTAGAGGATCAGGAAGGTGATTATCTGTTTAAGGCAGTTATGATCGGAGATTCTGGCGTCGGAAAATCTAATCTTCTTTCAAGGTTCGCCCGGAATGAATTCCTCCTCAATTCTAAGCCGACGATCGGAGTTGAATTTGCTTACCGGAACATCCAGGTCGGAGATAAACTCATCAAAGCTCAGATATGGGACACGGCCGGACAAGAAAGGTTTAGAGCAATAACAAGTTCATACTACAGAGGAGCATTAGGAGCAATACTAGTATACGACATAACCAGAGAATCGTCCTTCAAAAATGTGAAGAAATGGTTGAATGAACTGAGAGAGTATGCGAACGAAGACATCGTCATCGTTCTCGTCGGAAACAAATCGGATTTGAGAAGCTCGAGAGAGGTCGAAGAAGACGACGGAAGAACAGTTGCAGAAAAAGAGGGTTTGTTTTTCATGGAAACCTCTGCAATGGAAAATTTAAACGTGGAAGAAGCTTTTCTGCAACTCGTCACCAGAATCCATGAACTCACCGCTCAGAAGAGCTTGGATGCTAAGGCTAATGGAAAACCCACGTTAGATTTGCAGGGTGGGAAGGAGATCGCCATTGTTGATGAAGTTTCTGCAACTAAACAAGCTGGTTGCTGCCTTCAATGA 660 43.48 MANHSLEDQEGDYLFKAVMIGDSGVGKSNLLSRFARNEFLLNSKPTIGVEFAYRNIQVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAILVYDITRESSFKNVKKWLNELREYANEDIVIVLVGNKSDLRSSREVEEDDGRTVAEKEGLFFMETSAMENLNVEEAFLQLVTRIHELTAQKSLDAKANGKPTLDLQGGKEIAIVDEVSATKQAGCCLQ 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1046161 1048516 + Bma022676.1 Bma06g00065 83567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00065 219 TIGRFAM small_GTP: small GTP-binding protein domain 14 168 IPR005225 GO:0005525
Bma06g00065 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 187 IPR027417 -
Bma06g00065 219 CDD Rab11_like 12 176 - -
Bma06g00065 219 SMART ran_sub_2 20 211 - -
Bma06g00065 219 ProSiteProfiles small GTPase Rab1 family profile. 10 217 - -
Bma06g00065 219 PRINTS Transforming protein P21 ras signature 118 131 - -
Bma06g00065 219 PRINTS Transforming protein P21 ras signature 38 54 - -
Bma06g00065 219 PRINTS Transforming protein P21 ras signature 153 175 - -
Bma06g00065 219 PRINTS Transforming protein P21 ras signature 15 36 - -
Bma06g00065 219 PRINTS Transforming protein P21 ras signature 56 78 - -
Bma06g00065 219 SMART arf_sub_2 1 179 - -
Bma06g00065 219 PANTHER RAS-RELATED PROTEIN RABA6B 8 217 - -
Bma06g00065 219 SMART ras_sub_4 12 178 - -
Bma06g00065 219 ProSiteProfiles small GTPase Rho family profile. 8 176 - -
Bma06g00065 219 Gene3D - 8 217 IPR027417 -
Bma06g00065 219 SMART rab_sub_5 15 178 - -
Bma06g00065 219 Pfam Ras family 16 176 IPR001806 GO:0003924|GO:0005525
Bma06g00065 219 PANTHER DRAB11-RELATED 8 217 - -
Bma06g00065 219 SMART rho_sub_3 17 177 IPR001806 GO:0003924|GO:0005525
Bma06g00065 219 ProSiteProfiles small GTPase Ras family profile. 7 219 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00065 K07976 RAB; Rab family, other - pvy:116127588 313.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00060 Bma-Chr4:550875 Bma06g00065 Bma-Chr6:1046161 4.18E-19 dispersed
Bma04g00061 Bma-Chr4:553760 Bma06g00065 Bma-Chr6:1046161 2.48E-28 dispersed
Bma06g00065 Bma-Chr6:1046161 Bma12g00822 Bma-Chr12:38206080 2.68E-90 dispersed
Bma06g00065 Bma-Chr6:1046161 Bma01g01466 Bma-Chr1:27294274 2.92E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g216 . . . . . . Bma06g00065 . . . . . . Car11g00283 Sed14g1022 . Cpe04g01374 Bhi02g00132 Tan09g1830 Cmetu04g0229 . Hepe09g0382 . . Cla06g01425 Cam06g1579 Cec06g1639 Cco06g1631 . Cmu06g1495 Cre06g2304 Cone2ag0759 . . . . . . . . . . . . . . . . . Cmo11g00313 . . . . . . . . . . . . . . . . . . . . . Csa01g00428 Chy02g02316 Cme02g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012726 1 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00065 Bma_Chr06 FPKM 20.256361 27.417013 17.323738 18.172581 17.412754 15.296661 16.308601 19.254065 16.942039 20.563078