Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00068 ATGGCGTCCAATTCCGCTAATCTTTGGGTGCTGCTCGGGCTCGGTTTGGCCGGGATTCTGCTTATGACGAAGAAGCTCAGGAAGACTATCAGAGAAGACTTTGGCGCCTTTATAACGAAGCTTCAGTTGCTTCCTCCTCCTCCGCCTGCTCCTCCTAAAGCTCCTCATCCACTTTCCGGTCTCACCTTTGCAGTTTCCGACGTATTCGAAATTGAAGGACATGCTACTGGTTTTGGCCATCCTGACTGGGAAAGAACACATGATATATCTTTGCAGACATCTCCAGTTGTTTCTGCTTTAGTTGAAGGTGGGGCTACTTGCATTGGTAAAACTGTCGTGGATGAATTGTCATTTAGCATTAGTGGTGAAAACAAATATTATGGTACTCCTACGAATCCTGCAGCACCTTCAAGAGTTCCTGGCGGTGCCTCTTGCGGAGCTGCTGTGGCTGTAGCTGCCAAAATTGTTGACTTCTCTTTAGGTGTTGATACTGTTGGTGGAGTGAGAATACCTGCGGGGTTTTGTGGCATAGTAGGATTTCGTCCTTCTCATGGATCTGTTCCTCATGTGGGAATTATACCTATTTCATCAAGCCTTGACACCATGGGATGGTTTGCTAGGGATCCTATTGTTCTTCGTCGTGTTGGCCATGTTCTATTGAACCTTCCATATGGTGTCCAACGCAGTCCTAGGCAAATAATATTTGCTGATGATTGCTTTCAACTACTTAAGTTGCCTGTTGAAAGAGTTGCTCAAGTGGTCATAAAATCAACTGAGAAGCTTTTTGGAAGACAAGTAACAAAACATCAGAATATCGAAGATTATTTAAGCTCCAAGATTCCCAGTTTGAAAGAGTTTATCAATAAAAATGCAAATGGTGGATTGAGAACTTCCACTCTTAGATTGTTGGCAAAACTTGTGCAGAATCTTCAAAGGCACGAGTTCAAACAAAATCATAGTGAGTGGATTAACTCGGCGAAGCCTGTACTCAGTCCTTCCATCTCGGCACAAATATATGAAACACCAAATGCTGAGAATGCAGAGATTGAGCTGTGGAAATCAGTCAGAAATGAAATGCGATCTGCTATCAATTCTCTCTTGAAGGATGACGGAGTTCTTGTCATTCCTACCACTGCAGATCCTCCTCCAAAAGTTGGTGGAAAGGACCTACTATCAGAAGAGTTCCAGAATCGGACACTAAGTCTAACAAGTATTGCAAGTGTTTCAGGTTGTTGTCAGGTGGCTGTACCATTGGGATTTTATGACAAGACTCCCGTTTCCGTGTCTTCATAG 1293 43.7 MASNSANLWVLLGLGLAGILLMTKKLRKTIREDFGAFITKLQLLPPPPPAPPKAPHPLSGLTFAVSDVFEIEGHATGFGHPDWERTHDISLQTSPVVSALVEGGATCIGKTVVDELSFSISGENKYYGTPTNPAAPSRVPGGASCGAAVAVAAKIVDFSLGVDTVGGVRIPAGFCGIVGFRPSHGSVPHVGIIPISSSLDTMGWFARDPIVLRRVGHVLLNLPYGVQRSPRQIIFADDCFQLLKLPVERVAQVVIKSTEKLFGRQVTKHQNIEDYLSSKIPSLKEFINKNANGGLRTSTLRLLAKLVQNLQRHEFKQNHSEWINSAKPVLSPSISAQIYETPNAENAEIELWKSVRNEMRSAINSLLKDDGVLVIPTTADPPPKVGGKDLLSEEFQNRTLSLTSIASVSGCCQVAVPLGFYDKTPVSVSS 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1067907 1081704 - Bma022679.1 Bma06g00068 83570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00068 430 PANTHER AMIDASE 1 1 429 - -
Bma06g00068 430 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 429 - -
Bma06g00068 430 Gene3D Amidase signature (AS) domain 49 430 IPR036928 -
Bma06g00068 430 Pfam Amidase 55 213 IPR023631 -
Bma06g00068 430 SUPERFAMILY Amidase signature (AS) enzymes 50 428 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00068 - - - jre:118344722 626.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00288 Bma-Chr5:8293709 Bma06g00068 Bma-Chr6:1067907 6.06E-27 dispersed
Bma06g00068 Bma-Chr6:1067907 Bma09g00401 Bma-Chr9:33741223 2.60E-15 dispersed
Bma06g00068 Bma-Chr6:1067907 Bma08g00421 Bma-Chr8:13933684 2.67E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00068 Bma_Chr06 FPKM 9.369602 9.91118 13.494627 13.720039 38.41832 35.392227 37.461109 23.463194 23.3382 21.396507