Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00069 ATGCAGGTCTCCTTACACATCTCTAAACTTGTTTTGAGGAATAATGCTCTAACTACTTTGCGTGGGATTGAGAATTTGAGGTCACTAGAAGCTCTTGATGTGTCCTACAATATTATATCCAATTTCTCAGAAGTCGAAATCCTTGTTGGTCTTCCATCTCTTCAAAACTTGTGGTTGGAAGGAAATCCATTATGTTGTGCACGATGGTATCGCTCACATGTATTTAGCTACTTCTTAGATCCCTATAAATTGAAGCTAGATGACCATGGAATTAGCAATAGAGAGTTTTGGAAGCGACAAATAGTTGTTGCCAGCAAGCACAAGCGTCCTTCTAGTTTTGGTTTTTATTCTCCTGCCAATGATGATACTAGAAGAGAGGGTAGTATTATCAAGAATAAGATAAAGGTTTCTCGACTTGCTTCTATCGAGAGTGAAGAAGAGAGCACATATGTATGCTCCGACCAAGAATCTGGGTCATGTGATAATGAGAGTCAAAGCAAAGAAGAGACAATTATATCAGAAAATGAGTTGGAAATAGCTGATTTGATAAATCGGATTGAAATTATGAAGAAAGAACGTTCTCATAATTGGTTGCATGAGTTTAAAGATTGGATGAATCATGAATCTGAGAATTTTGTTGATGGAAATGCTTACAATAGAACTAAATTGCAGTTTGGGAAAGAAAATTCGATAAGGAACAATCAAATAAAGAAACATATTGGGGAAAGCTCACGATATGCGACAGACTCTGTTCAAGAATCTGAAGATGAAAGCAGCATAAACTTATTAGAATCAGATAATTCGTTCGTAGATTCATCTTTTGCTTTGCATTCATCACAGCGCTTTGGCCAACGTGGTATTGGCGGAATGCAGAGAGAAGATTTAAAAGAAGGAGAGTTGAATTCTTTTTCAGATGCAAGGATTAATAATGCACCCAGGCATTCTAACAGCTCTCGTCATAGTTTCCTTGGAGGTCACCAGAATGGGATGGCTGAAAATGCTTACTATTCACCTTTGCGTGTTGCTAATTATAGATCTGAGTCTCAGTCATCCTTAGCCTACCCTGGATCACCACCACAATATCGAGCAGACATTCTTCATCAACGCCAGATCTTAGTCGAAGAGATTTTGCAGCTATCTGCTGAGTCCTATTCCGTTGCTTCTTCTGACAGCAATACCAGCTCTAGTGAAGATGATGGCATTCCAGAAATCATTCCATCAATGCTCCAGGCTGATAAGTCTGTCGACGAGACCAAGGCTGATGGAGGTGAAAATCAGCCGTTGAGTAGTCATTATGAAAAGGACAGTCTCCCAGGGCATGTATTTCCTTCTGTGAAGGAAAATGGTCAACTCGCGTCTGATTCTTTTGTCACGCAAACGCGTAGTTGGCAGAAGCCAGTAGATGTGGACCACTACCGGGAAGAACATACGAATGACTTCTCTCTCCCTTCTACTTCTCATGGGAATGAAATTGACCAATCTCACAACCAAGAAGCTTGGAGGAAGAGAGAAAGCAAAAGAAAAGCAAAAAGAAGGGTAATTTCTATGTTGGAAAATGATGTAGTTGGCAGTACAGAAGAATCACAAAAAACCAATTGTGGTTTAACTGATATGGAGAATGAGAGAATGGCTAATTGCTTTATTGAGAATTACTTCAGTATGAACATTGCAGATTCTGGGGTAAATGAAACTTGTAGGCAGTATTTGCACTGCAGTTGTATACTTGATCCAGAAGTCACGTGGCAAGAAAGTAATGTCATTCTGTTACTGAGCAGTGAAAACAAGTTGTATGTGCTTCTCAATGATGTTGCAGCAGGAGGAGCAGGAGCTTCTCTAACTTTAATTGGTTGCCACGGGGTCGAAGATGTAAGAGAGGCATTATTTGGTCTAGGGCTGCAAGTTGTCAGGTTGCACACTTATAATGATGCCAAATACCTGTTCCTAACGAGAAGCATTGAGAAATCGAGACAATTACTTTTCATGCTGCAAGTTTGTGATACATCAATTCCAAATGATAAATGTATTTTAAGAAGCGTGGAGTACGTTCAAGTGGAATTATTTGACAAACAGTTATGTGAAGATTCAAGAGCAAGCATATTCCAATACTCTATGGTGCATTTTTGGTGTGATATGAATAAAGAGGAATGGCTTTCAAGATCATTATTTGTTATTAGAGGGCATTTGCTTCTATGCATTGAGAATCTGTTGCTATTCGGTAGTCTTTCAACAAAACCATTTCTATCTCCGTACTTCACCCTTGATTCATGCTGCTCGACTTCGGATATAACAGAGTTGGTTATTGAAACCAAAGGCCAACTCTGTGTGGCTATAGCTTTCGGCCCATCGATGGGAGTTGACGATGAAGTTGCCTGCACCAAAAATGAGAAGGCAGCATCTAGTGCTCGTGAATGGAAGCTGAAGTGGTTCTCATTGGAAGGTCTGCGTAACTTTGTGGCCTTGATGAAAGCGCTTCACCTCGACTCATCAACGTCTCCTTTGCACGTAAGATACATATAG 2517 40.01 MQVSLHISKLVLRNNALTTLRGIENLRSLEALDVSYNIISNFSEVEILVGLPSLQNLWLEGNPLCCARWYRSHVFSYFLDPYKLKLDDHGISNREFWKRQIVVASKHKRPSSFGFYSPANDDTRREGSIIKNKIKVSRLASIESEEESTYVCSDQESGSCDNESQSKEETIISENELEIADLINRIEIMKKERSHNWLHEFKDWMNHESENFVDGNAYNRTKLQFGKENSIRNNQIKKHIGESSRYATDSVQESEDESSINLLESDNSFVDSSFALHSSQRFGQRGIGGMQREDLKEGELNSFSDARINNAPRHSNSSRHSFLGGHQNGMAENAYYSPLRVANYRSESQSSLAYPGSPPQYRADILHQRQILVEEILQLSAESYSVASSDSNTSSSEDDGIPEIIPSMLQADKSVDETKADGGENQPLSSHYEKDSLPGHVFPSVKENGQLASDSFVTQTRSWQKPVDVDHYREEHTNDFSLPSTSHGNEIDQSHNQEAWRKRESKRKAKRRVISMLENDVVGSTEESQKTNCGLTDMENERMANCFIENYFSMNIADSGVNETCRQYLHCSCILDPEVTWQESNVILLLSSENKLYVLLNDVAAGGAGASLTLIGCHGVEDVREALFGLGLQVVRLHTYNDAKYLFLTRSIEKSRQLLFMLQVCDTSIPNDKCILRSVEYVQVELFDKQLCEDSRASIFQYSMVHFWCDMNKEEWLSRSLFVIRGHLLLCIENLLLFGSLSTKPFLSPYFTLDSCCSTSDITELVIETKGQLCVAIAFGPSMGVDDEVACTKNEKAASSAREWKLKWFSLEGLRNFVALMKALHLDSSTSPLHVRYI 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1085450 1091404 + Bma022680.1 Bma06g00069 83571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00069 838 PANTHER NISCHARIN RELATED 2 835 - -
Bma06g00069 838 MobiDBLite consensus disorder prediction 307 324 - -
Bma06g00069 838 Coils Coil 172 192 - -
Bma06g00069 838 MobiDBLite consensus disorder prediction 307 326 - -
Bma06g00069 838 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 2 835 - -
Bma06g00069 838 Gene3D Ribonuclease Inhibitor 2 96 IPR032675 -
Bma06g00069 838 ProSiteProfiles Leucine-rich repeat profile. 28 49 IPR001611 GO:0005515
Bma06g00069 838 MobiDBLite consensus disorder prediction 478 507 - -
Bma06g00069 838 SUPERFAMILY L domain-like 7 92 - -
Bma06g00069 838 MobiDBLite consensus disorder prediction 416 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00069 - - - zju:107418533 747.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g183 . . . . . Bpe13g00380 Bma06g00069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010273 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00069 Bma_Chr06 FPKM 1.048855 0.91558 7.166168 8.19797 3.113775 3.140292 2.318406 43.377357 45.561573 43.714069