Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00071 ATGAGTTCTCAACTTCGAAATGAAGGAAGGGATAGGTCAAAAGTAGCCATGCCACATTCTCGCCAAGAGTGGGTTCCGAGAGGATCATCGACTGTAGTTAAGGACCAAGCATTGAGTCTCAATTCAAACTTGAATGTAAATAGCGGAGAGTCGAATAATGCCGATTCTTCTACTAGTAGACATGGAAGGATTCCCAGTCGAAGAGTGGTTCAAGAGGGCCGATTTGCAAACCAGAGGAGGGCCCGGTACAAAGGGAAAGAGAGTGATGAAAATTCTAAGGAGCGGGTTGTCAAGGAAGTAAATCTGCCACAGCTTGTTCAAGAAATTCAAGAGAAGCTGATTAAAAACTCGGTTGAGTGCATGATTTGTTATGATATGGTGCGGAGATCGGCACCAATTTGGTCTTGTTCAAGCTGTTATTCTATTTTTCATTTAAGTTGTATCAAGAAATGGGCTCAGGCTCCTACATCCGTTGATTTATTGGCAGAAAGAAATCAGGGCTATAATTGGAGGTGTCCCGGGTGCCAATCTGTGCAACTAACATCATCAAAGGAGATTCGATATGTTTGCTTCTGTGGAAAGAGGCAAGATCCTCCTTCTGATTTGTACTTAACCCCACATTCATGTGGTGAACACTGTGGTAAAACACTTGAGAGGGAGATTGCTGGCGCTAAAGTAATTAAGGAGGATCTCTGTCCTCATGTTTGTGTATTACAGTGCCATCCCGGTCCATGTCCTCCTTGTAAGGCATTTGCTCCACCTCGATTGTGTCCGTGTGGGAAAAAAACTATAACTACACGCTGCTCTGAAAGGAAGTCCGATCTTACTTGTGGGCAGCAATGCGATAAACTTCTTGACTGCCTTCGTCATCGGTGTGAGCAAATGTGCCATACAGGTCCTTGTGACCCCTGTCAACTTCTAGTCAATGCCTCTTGTTTCTGCAAGAAAAAGACAGAGGTTGTTCTTTGTGGAGATATGGTTGTGAAAGGTGAAGTGAATGCAACAGATGGTCTATTTTCATGTAACTCTACTTGTGGAAGGATAATAAGCTGCGGTAATCATTTATGTCCTGAAATTTGTCATCCTGGTGCCTGTGGGGACTGTGACACTATGCCAGAAAAAATCAAGACATGTTCTTGTGGAAAAACAAGCTTGCAGGAGGAGCGAACAAGTTGTTTGGATCCAATTCCGACGTGTTCAGAAACCTGTGGGAAGTTACTACCTTGCGGGTTACATCACTGTAAAGAGATGTGTCATACAGGAGATTGTTCGCCTTGTTTGGTTCAAGTTTTGCAGAAATGCCGTTGTGGATCAACCTCTCGGACAGTGGAATGTTACAAAACAGCAATTGCGACGGAGATATTGACCTGTGATAGATCTTGCGGGCAGAAGAAGAATTGTGGAAGACATCGATGTAGCGAGAGATGCTGTCCTTTGTCGTCTTCACATAATCTTCTTTCTGGGGAATGGGATCCACATTTGTGCTCAATGCCCTGTGGGAAGAAACTAAGATGTGGTCAGCATTCTTGTGAATCACTTTGTCACAGTGGGCATTGCCCTCCATGCCTGGAAACAATTTTCAGCGATTTGACTTGTGCATGCGGGAGGACCTCACTTCCTCCCCCCTTACCTTGTGGTACACCTCAACCTTCATGTCAACTTCCATGTTCAGTCCCTCAGCCTTGTGGGCATTTGTCTTCACACAGCTGCCACTTTGGAGATTGTCCCCCCTGTGCCGTTCCTATAGAGAAGGAATGCATTGGTGGACATGTTGTTCTAAGAAATATACCTTGCGGTTCAAGAGATATCAAATGTAACAAGCTCTGTGGGAAGACAAGACAGTGTGGCCTGCATGCTTGTGGCAGAAGGTGTCACCCACCACCTTGTGACATGTTGTGTGGGTCTGATTTAGAATCGGGTCAGAAAGCTTCGTGTGGGCAGACCTGTGGTGCTCCTCGGAGAGATTGCAGACATACTTGCAATGTGCCTTGTCATCCTTATTCTCCCTGCCCAGATACAAGATGTAATGTCTCTGTCACAATTAGTTGTTCTTGTAACCGGATCACAGCCACCGTTCCTTGTGACGTCGGTGGCAACAGTTCTGGTTTTAATGCCGACACTGTGCTTGAAGCTTCCATTATTCAGAAGTTGCCAGTTCCACTTCAACCTGTCGAGGGAAATGGCAGAAAGATCCCTCTGAGTCAAAGGAAGCTTATGTGTGATGATGAATGTGCCAAGTTGGAGCGGAAACGCTTACTTGCAGATGCTTTTGATATTGCCACTCCAAATTTGGAGTCACTTCATTTTGGCGAGGATTCTGCTGTTTCTGAATTAGTTTCAGACTTATTCAGGCGGGATGCAAAGTGGGTTTTGTCTGTGGAGGATCGGTGTAGATTTTTGGTCCTTGGAAAGCACAAAGGAACAGTACTTGGTGTTCGATCACACGTCTTCTGCCCAATGACGAAAGACAAGAGAGATGCAGTGCGGCTAATTGCCGGTAGGTGGAAGCTGGCAGTTACTTCCGCTGGTTGGGAGCCAAAGCGCTTTGTTGCAATACACGTAACCGTCAAATCGAAAGCTCCTGCCCGGCTGCTTGGGGTCAAGGGCTCGATCAGTATAAGCGCCCCTCATCCTCCAGCTTTTGATCCTTTGGTAGATATGGATCCTAGGCTACTTGTTTCTTTTCCTGATTTCCCAAGGGAAGCAGATATAAGTGCACTGGTTTTGAGGTTTGGCGGGGAGTGTGAACTGGTCTGGTTGAACGACAAGAATGCATTGGCCGTATTCAACGATCCTGCTCGAGCAGCTACTGCGTTGAGGAGGTTGGATTATGCAACAGTTTATCATGGAGTTGCCGTACTTCAAACAGTGAGTACAGCCACATCTTCTGGTGCTAATGCTTGGGGGGGAAAGGGTGTGAATCCATGGAAGACGGCTGTAGTTGAGGACTCTGGTTGGCAAGAAGGTTCGAGGTCTGGCGTGTCTCCAGAATTTAATGAATCTGTGTGGAAGAAAGAAGCTCCAATTTCTGCATCTTTGAATCGCTGGCACGTCCTTGAACCTGAAGCCGGTTTAAGTTCGTCGTTTGCACCAGTTAAAGTCAGTAATTCTGTTCCGCAATCGGAGTCAAACACTAGCGAATTGAATTCTGGAGAACCACGGGAAGAATTTCTTACCGAGGATGGCTCGTCCGAGGTGGTGGATGATTGGGAAAAGGCCTATGAATGA 3228 46.16 MSSQLRNEGRDRSKVAMPHSRQEWVPRGSSTVVKDQALSLNSNLNVNSGESNNADSSTSRHGRIPSRRVVQEGRFANQRRARYKGKESDENSKERVVKEVNLPQLVQEIQEKLIKNSVECMICYDMVRRSAPIWSCSSCYSIFHLSCIKKWAQAPTSVDLLAERNQGYNWRCPGCQSVQLTSSKEIRYVCFCGKRQDPPSDLYLTPHSCGEHCGKTLEREIAGAKVIKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSERKSDLTCGQQCDKLLDCLRHRCEQMCHTGPCDPCQLLVNASCFCKKKTEVVLCGDMVVKGEVNATDGLFSCNSTCGRIISCGNHLCPEICHPGACGDCDTMPEKIKTCSCGKTSLQEERTSCLDPIPTCSETCGKLLPCGLHHCKEMCHTGDCSPCLVQVLQKCRCGSTSRTVECYKTAIATEILTCDRSCGQKKNCGRHRCSERCCPLSSSHNLLSGEWDPHLCSMPCGKKLRCGQHSCESLCHSGHCPPCLETIFSDLTCACGRTSLPPPLPCGTPQPSCQLPCSVPQPCGHLSSHSCHFGDCPPCAVPIEKECIGGHVVLRNIPCGSRDIKCNKLCGKTRQCGLHACGRRCHPPPCDMLCGSDLESGQKASCGQTCGAPRRDCRHTCNVPCHPYSPCPDTRCNVSVTISCSCNRITATVPCDVGGNSSGFNADTVLEASIIQKLPVPLQPVEGNGRKIPLSQRKLMCDDECAKLERKRLLADAFDIATPNLESLHFGEDSAVSELVSDLFRRDAKWVLSVEDRCRFLVLGKHKGTVLGVRSHVFCPMTKDKRDAVRLIAGRWKLAVTSAGWEPKRFVAIHVTVKSKAPARLLGVKGSISISAPHPPAFDPLVDMDPRLLVSFPDFPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATALRRLDYATVYHGVAVLQTVSTATSSGANAWGGKGVNPWKTAVVEDSGWQEGSRSGVSPEFNESVWKKEAPISASLNRWHVLEPEAGLSSSFAPVKVSNSVPQSESNTSELNSGEPREEFLTEDGSSEVVDDWEKAYE 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1100891 1104118 - Bma022682.1 Bma06g00071 83573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00071 1075 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 15 1054 - -
Bma06g00071 1075 SUPERFAMILY RING/U-box 108 179 - -
Bma06g00071 1075 SMART znfxneu3 562 580 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 SMART znfxneu3 505 524 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 SMART znfxneu3 287 306 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 SMART znfxneu3 409 428 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 SMART znfxneu3 656 677 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 SMART znfxneu3 351 370 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 SMART znfxneu3 232 250 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 SMART znfxneu3 615 647 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 ProSiteProfiles Zinc finger PHD-type profile. 117 178 IPR019787 -
Bma06g00071 1075 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 15 1054 IPR034078 GO:0003700
Bma06g00071 1075 MobiDBLite consensus disorder prediction 24 60 - -
Bma06g00071 1075 CDD NF-X1-zinc-finger 399 447 - -
Bma06g00071 1075 CDD NF-X1-zinc-finger 209 270 - -
Bma06g00071 1075 MobiDBLite consensus disorder prediction 1053 1075 - -
Bma06g00071 1075 CDD NF-X1-zinc-finger 277 325 - -
Bma06g00071 1075 MobiDBLite consensus disorder prediction 1 68 - -
Bma06g00071 1075 MobiDBLite consensus disorder prediction 1030 1075 - -
Bma06g00071 1075 MobiDBLite consensus disorder prediction 1030 1052 - -
Bma06g00071 1075 Pfam NF-X1 type zinc finger 467 478 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 351 368 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 289 305 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 505 522 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 409 426 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 568 578 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 649 671 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 234 249 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 Pfam NF-X1 type zinc finger 615 630 IPR000967 GO:0005634|GO:0008270
Bma06g00071 1075 ProSiteProfiles Zinc finger RING-type profile. 120 176 IPR001841 -
Bma06g00071 1075 CDD RING-CH-C4HC3_NFX1 119 176 - -
Bma06g00071 1075 CDD NF-X1-zinc-finger 495 547 - -
Bma06g00071 1075 CDD NF-X1-zinc-finger 341 384 - -
Bma06g00071 1075 CDD NF-X1-zinc-finger 645 694 - -
Bma06g00071 1075 CDD NF-X1-zinc-finger 552 600 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00071 K12236 NFX1; transcriptional repressor NF-X1 - zju:107419567 1656.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00927 Bma06g00071 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00175 Bma-Chr3:1341601 Bma06g00071 Bma-Chr6:1100891 1.18E-16 transposed
Bma03g00927 Bma-Chr3:9612912 Bma06g00071 Bma-Chr6:1100891 9.84E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g162 Blo04g00860 . . . . . Bma06g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00250 . . . . . . . . . Bma03g00927 . . . . . . . . . . Bhi08g01330 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011037 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57408 PF01422 zf-NF-X1 1.50E+02 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00071 Bma_Chr06 FPKM 20.943548 25.035381 21.552801 21.694378 31.369633 29.353483 30.646273 13.114707 12.050608 12.509254